Sat, 14 Nov 2026 19:24:25 UTC Log in
General purpose library to handle gene sequencing machine trace files 459.98 KB built 2026-10-18 00:26:12 GMT

Description

The Staden I/O library provides a general purpose interface for reading and writing trace files and other bioinformatics experiment files. The programmer simply calls, for example, the read_reading function to create a "Read" C structure with the data loaded into memory. It has been compiled and tested on a variety of Unix systems, MacOS X and MS Windows.

Dependencies

21 total
Requires18
  • ld-linux-riscv64-lp64d.so.1()(64bit)
  • ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit)
  • libc.so.6()(64bit)
  • libc.so.6(GLIBC_2.27)(64bit)
  • libc.so.6(GLIBC_2.33)(64bit)
  • libc.so.6(GLIBC_2.34)(64bit)
  • libc.so.6(GLIBC_2.38)(64bit)
  • libcurl.so.4()(64bit)
  • libm.so.6()(64bit)
  • libm.so.6(GLIBC_2.27)(64bit)
  • libstaden-read.so.11()(64bit)
  • libz.so.1()(64bit)
  • libz.so.1(ZLIB_1.2.0.2)(64bit)
  • rpmlib(CompressedFileNames) <= 3.0.4-1
  • rpmlib(FileDigests) <= 4.6.0-1
  • rpmlib(PayloadFilesHavePrefix) <= 4.0-1
  • rpmlib(PayloadIsZstd) <= 5.4.18-1
  • rtld(GNU_HASH)
Provides3
  • libstaden-read.so.11()(64bit)
  • staden-io_lib = 1.14.8-8.fc45
  • staden-io_lib(riscv-64) = 1.14.8-8.fc45
ObsoletesNo Obsoletes
ConflictsNo Conflicts
RecommendsNo Recommends
SuggestsNo Suggests
SupplementsNo Supplements
EnhancesNo Enhances

Files

120
Name ascending sort Size
/usr/bin/append_sff 11.15 KB
/usr/bin/convert_trace 23.60 KB
/usr/bin/cram_dump 27.26 KB
/usr/bin/cram_index 11.13 KB
/usr/bin/cram_size 15.20 KB
/usr/bin/extract_fastq 11.16 KB
/usr/bin/extract_qual 15.17 KB
/usr/bin/extract_seq 15.16 KB
/usr/bin/get_comment 11.17 KB
/usr/bin/hash_exp 11.16 KB
/usr/bin/hash_extract 11.15 KB
/usr/bin/hash_list 11.18 KB
/usr/bin/hash_sff 15.16 KB
/usr/bin/hash_tar 19.24 KB
/usr/bin/index_tar 11.15 KB
/usr/bin/makeSCF 19.27 KB
/usr/bin/scf_dump 11.13 KB
/usr/bin/scf_info 11.16 KB
/usr/bin/scf_update 11.12 KB
/usr/bin/scram_flagstat 19.16 KB
/usr/bin/scram_merge 19.18 KB
/usr/bin/scram_pileup 15.24 KB
/usr/bin/scram_test 19.16 KB
/usr/bin/scramble 19.20 KB
/usr/bin/srf2fasta 11.16 KB
/usr/bin/srf2fastq 23.23 KB
/usr/bin/srf_dump_all 31.57 KB
/usr/bin/srf_extract_hash 11.20 KB
/usr/bin/srf_extract_linear 11.17 KB
/usr/bin/srf_filter 31.50 KB
/usr/bin/srf_index_hash 11.16 KB
/usr/bin/srf_info 23.44 KB
/usr/bin/srf_list 11.18 KB
/usr/bin/trace_dump 11.14 KB
/usr/bin/ztr_dump 15.18 KB
/usr/lib/.build-id 0.00 B
/usr/lib/.build-id/0a 0.00 B
/usr/lib/.build-id/0a/4f83374cbacfe8d9ffa9616327e3c83c61a291 28.00 B
/usr/lib/.build-id/0c 0.00 B
/usr/lib/.build-id/0c/eefe6999795ff8266b92d5c91e6f310ef9d6fd 32.00 B
/usr/lib/.build-id/0e 0.00 B
/usr/lib/.build-id/0e/06dd749238034ab8d29a734ccd2d4bed523725 30.00 B
/usr/lib/.build-id/10 0.00 B
/usr/lib/.build-id/10/575807e03d1b7df8bb3d9f99b875095143d0f9 29.00 B
/usr/lib/.build-id/1f 0.00 B
/usr/lib/.build-id/1f/bfb2be27386669822e62309f31f369cc7e6217 29.00 B
/usr/lib/.build-id/39 0.00 B
/usr/lib/.build-id/39/043b5aed6d1e608e3147750b48727f6f7cdc9d 28.00 B
/usr/lib/.build-id/46 0.00 B
/usr/lib/.build-id/46/a5a6b1d89e1de2a25d41e282a6419b33019aa3 32.00 B
Files 1–50 of 120 Next →
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