Fri, 13 Nov 2026 08:04:16 UTC Log in
pysam 2.41 MB built 2026-10-17 12:32:44 GMT

Description

pysam - a python module for reading, manipulating and writing genomic data sets.pysam is a lightweight wrapper of the htslib C-API and provides facilities to read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access to the command line functionality of the samtools and bcftools packages. The module supports compression and random access through indexing.

Dependencies

45 total
Requires23
  • ld-linux-riscv64-lp64d.so.1()(64bit)
  • ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit)
  • libbz2.so.1()(64bit)
  • libc.so.6()(64bit)
  • libc.so.6(GLIBC_2.27)(64bit)
  • libc.so.6(GLIBC_2.33)(64bit)
  • libc.so.6(GLIBC_2.34)(64bit)
  • libc.so.6(GLIBC_2.38)(64bit)
  • libcbcftools.cpython-315-riscv64-linux-gnu.so()(64bit)
  • libchtslib.cpython-315-riscv64-linux-gnu.so()(64bit)
  • libcsamtools.cpython-315-riscv64-linux-gnu.so()(64bit)
  • liblzma.so.5()(64bit)
  • liblzma.so.5(XZ_5.0)(64bit)
  • libm.so.6()(64bit)
  • libm.so.6(GLIBC_2.27)(64bit)
  • libz.so.1()(64bit)
  • python(abi) = 3.15
  • rpmlib(CompressedFileNames) <= 3.0.4-1
  • rpmlib(FileDigests) <= 4.6.0-1
  • rpmlib(PartialHardlinkSets) <= 4.0.4-1
  • rpmlib(PayloadFilesHavePrefix) <= 4.0-1
  • rpmlib(PayloadIsZstd) <= 5.4.18-1
  • rtld(GNU_HASH)
Provides22
  • bundled(bcftools) = 1.23.1
  • bundled(htslib) = 1.23.1
  • bundled(samtools) = 1.23.1
  • libcalignedsegment.cpython-315-riscv64-linux-gnu.so()(64bit)
  • libcalignmentfile.cpython-315-riscv64-linux-gnu.so()(64bit)
  • libcbcf.cpython-315-riscv64-linux-gnu.so()(64bit)
  • libcbcftools.cpython-315-riscv64-linux-gnu.so()(64bit)
  • libcbgzf.cpython-315-riscv64-linux-gnu.so()(64bit)
  • libcfaidx.cpython-315-riscv64-linux-gnu.so()(64bit)
  • libchtslib.cpython-315-riscv64-linux-gnu.so()(64bit)
  • libcsamfile.cpython-315-riscv64-linux-gnu.so()(64bit)
  • libcsamtools.cpython-315-riscv64-linux-gnu.so()(64bit)
  • libctabix.cpython-315-riscv64-linux-gnu.so()(64bit)
  • libctabixproxies.cpython-315-riscv64-linux-gnu.so()(64bit)
  • libcutils.cpython-315-riscv64-linux-gnu.so()(64bit)
  • libcvcf.cpython-315-riscv64-linux-gnu.so()(64bit)
  • python-pysam = 0.24.0-4.fc45
  • python3-pysam = 0.24.0-4.fc45
  • python3-pysam(riscv-64) = 0.24.0-4.fc45
  • python3.15-pysam = 0.24.0-4.fc45
  • python3.15dist(pysam) = 0.24
  • python3dist(pysam) = 0.24
ObsoletesNo Obsoletes
ConflictsNo Conflicts
RecommendsNo Recommends
SuggestsNo Suggests
SupplementsNo Supplements
EnhancesNo Enhances

Files

91
Name ascending sort Size
/usr/lib/.build-id 0.00 B
/usr/lib/.build-id/04 0.00 B
/usr/lib/.build-id/04/057403c64cb25c0d4e10ed9edcf70de8a4716d 94.00 B
/usr/lib/.build-id/15 0.00 B
/usr/lib/.build-id/15/45f10f349ef9330633608a39032640d6387965 95.00 B
/usr/lib/.build-id/48 0.00 B
/usr/lib/.build-id/48/09149a8f0e70cf6088dc5392b9612903cb2c85 104.00 B
/usr/lib/.build-id/55 0.00 B
/usr/lib/.build-id/55/e4c3551935ad809efeb452b71335658bf8dfee 93.00 B
/usr/lib/.build-id/5d 0.00 B
/usr/lib/.build-id/5d/1b58055d0c236d12371ddfb31d029dc83d6387 96.00 B
/usr/lib/.build-id/71 0.00 B
/usr/lib/.build-id/71/8759fa8f42c1aedeb3f9e7110871678672e248 95.00 B
/usr/lib/.build-id/91 0.00 B
/usr/lib/.build-id/91/8c283d6485aab42b2c312897417f53b80c2ff8 103.00 B
/usr/lib/.build-id/97 0.00 B
/usr/lib/.build-id/97/5c52e6b2203b5f187964a7ec0d92365bf968a8 98.00 B
/usr/lib/.build-id/b5 0.00 B
/usr/lib/.build-id/b5/5d731671f1ed8b67a297fe67a3815a690efbfd 98.00 B
/usr/lib/.build-id/bd 0.00 B
/usr/lib/.build-id/bd/e1feae2b75d05b5f1eee994152284332f04e07 97.00 B
/usr/lib/.build-id/ef 0.00 B
/usr/lib/.build-id/ef/f21f864c7c6e9a66691d935350d20cbb4fe581 93.00 B
/usr/lib/.build-id/f2 0.00 B
/usr/lib/.build-id/f2/149d77e3e3a031337993ecf199bb1e31997b8b 95.00 B
/usr/lib/.build-id/f3 0.00 B
/usr/lib/.build-id/f3/7b232de6f3367f79e9111f91afe29ecd5ed9d6 102.00 B
/usr/lib64/python3.15/site-packages/pysam 0.00 B
/usr/lib64/python3.15/site-packages/pysam-0.24.0.dist-info 0.00 B
/usr/lib64/python3.15/site-packages/pysam-0.24.0.dist-info/INSTALLER 4.00 B
/usr/lib64/python3.15/site-packages/pysam-0.24.0.dist-info/METADATA 1.59 KB
/usr/lib64/python3.15/site-packages/pysam-0.24.0.dist-info/WHEEL 105.00 B
/usr/lib64/python3.15/site-packages/pysam-0.24.0.dist-info/licenses 0.00 B
/usr/lib64/python3.15/site-packages/pysam-0.24.0.dist-info/licenses/AUTHORS 1.34 KB
/usr/lib64/python3.15/site-packages/pysam-0.24.0.dist-info/licenses/COPYING 1.06 KB
/usr/lib64/python3.15/site-packages/pysam-0.24.0.dist-info/top_level.txt 6.00 B
/usr/lib64/python3.15/site-packages/pysam/Pileup.py 8.75 KB
/usr/lib64/python3.15/site-packages/pysam/__init__.py 3.35 KB
/usr/lib64/python3.15/site-packages/pysam/__pycache__ 0.00 B
/usr/lib64/python3.15/site-packages/pysam/__pycache__/Pileup.cpython-315.opt-1.pyc 9.92 KB
/usr/lib64/python3.15/site-packages/pysam/__pycache__/Pileup.cpython-315.pyc 10.07 KB
/usr/lib64/python3.15/site-packages/pysam/__pycache__/__init__.cpython-315.opt-1.pyc 3.98 KB
/usr/lib64/python3.15/site-packages/pysam/__pycache__/__init__.cpython-315.pyc 3.98 KB
/usr/lib64/python3.15/site-packages/pysam/__pycache__/bcftools.cpython-315.opt-1.pyc 2.29 KB
/usr/lib64/python3.15/site-packages/pysam/__pycache__/bcftools.cpython-315.pyc 2.29 KB
/usr/lib64/python3.15/site-packages/pysam/__pycache__/config.cpython-315.opt-1.pyc 403.00 B
/usr/lib64/python3.15/site-packages/pysam/__pycache__/config.cpython-315.pyc 403.00 B
/usr/lib64/python3.15/site-packages/pysam/__pycache__/samtools.cpython-315.opt-1.pyc 4.88 KB
/usr/lib64/python3.15/site-packages/pysam/__pycache__/samtools.cpython-315.pyc 4.88 KB
/usr/lib64/python3.15/site-packages/pysam/__pycache__/utils.cpython-315.opt-1.pyc 5.39 KB
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