pysam
2.41 MB
built 2026-10-17 12:32:44 GMT
Description
pysam - a python module for reading, manipulating and writing genomic data
sets.pysam is a lightweight wrapper of the htslib C-API and provides facilities
to read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as
access to the command line functionality of the samtools and bcftools packages.
The module supports compression and random access through indexing.
Dependencies
45 totalRequires23
- ld-linux-riscv64-lp64d.so.1()(64bit)
- ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit)
- libbz2.so.1()(64bit)
- libc.so.6()(64bit)
- libc.so.6(GLIBC_2.27)(64bit)
- libc.so.6(GLIBC_2.33)(64bit)
- libc.so.6(GLIBC_2.34)(64bit)
- libc.so.6(GLIBC_2.38)(64bit)
- libcbcftools.cpython-315-riscv64-linux-gnu.so()(64bit)
- libchtslib.cpython-315-riscv64-linux-gnu.so()(64bit)
- libcsamtools.cpython-315-riscv64-linux-gnu.so()(64bit)
- liblzma.so.5()(64bit)
- liblzma.so.5(XZ_5.0)(64bit)
- libm.so.6()(64bit)
- libm.so.6(GLIBC_2.27)(64bit)
- libz.so.1()(64bit)
- python(abi) = 3.15
- rpmlib(CompressedFileNames) <= 3.0.4-1
- rpmlib(FileDigests) <= 4.6.0-1
- rpmlib(PartialHardlinkSets) <= 4.0.4-1
- rpmlib(PayloadFilesHavePrefix) <= 4.0-1
- rpmlib(PayloadIsZstd) <= 5.4.18-1
- rtld(GNU_HASH)
Provides22
- bundled(bcftools) = 1.23.1
- bundled(htslib) = 1.23.1
- bundled(samtools) = 1.23.1
- libcalignedsegment.cpython-315-riscv64-linux-gnu.so()(64bit)
- libcalignmentfile.cpython-315-riscv64-linux-gnu.so()(64bit)
- libcbcf.cpython-315-riscv64-linux-gnu.so()(64bit)
- libcbcftools.cpython-315-riscv64-linux-gnu.so()(64bit)
- libcbgzf.cpython-315-riscv64-linux-gnu.so()(64bit)
- libcfaidx.cpython-315-riscv64-linux-gnu.so()(64bit)
- libchtslib.cpython-315-riscv64-linux-gnu.so()(64bit)
- libcsamfile.cpython-315-riscv64-linux-gnu.so()(64bit)
- libcsamtools.cpython-315-riscv64-linux-gnu.so()(64bit)
- libctabix.cpython-315-riscv64-linux-gnu.so()(64bit)
- libctabixproxies.cpython-315-riscv64-linux-gnu.so()(64bit)
- libcutils.cpython-315-riscv64-linux-gnu.so()(64bit)
- libcvcf.cpython-315-riscv64-linux-gnu.so()(64bit)
- python-pysam = 0.24.0-4.fc45
- python3-pysam = 0.24.0-4.fc45
- python3-pysam(riscv-64) = 0.24.0-4.fc45
- python3.15-pysam = 0.24.0-4.fc45
- python3.15dist(pysam) = 0.24
- python3dist(pysam) = 0.24
ObsoletesNo Obsoletes
ConflictsNo Conflicts
RecommendsNo Recommends
SuggestsNo Suggests
SupplementsNo Supplements
EnhancesNo Enhances
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