Rule-based modeling of biochemical systems as Python programs
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built 2026-10-17 12:30:37 GMT
Description
PySB is a framework for building mathematical models of biochemical
systems as Python programs. PySB abstracts the complex process of
creating equations describing interactions among multiple proteins or
other biomolecules into a simple and intuitive domain specific
programming language, which is internally translated into BioNetGen or
Kappa rules and from there into systems of equations. PySB makes it
straightforward to divide models into modules and to call libraries of
reusable elements (macros) that encode standard biochemical actions.
These features promote model transparency, reuse and accuracy. PySB
also interoperates with standard scientific Python libraries such as
NumPy, SciPy and SymPy enabling model simulation and analysis.
Dependencies
14 totalRequires12
- dvipng
- make
- perl-macros
- python3-devel
- python3-ipython-sphinx
- python3-setuptools < 82
- python3-sphinx
- python3dist(numpydoc)
- rpmlib(CompressedFileNames) <= 3.0.4-1
- rpmlib(FileDigests) <= 4.6.0-1
- tex(anyfontsize.sty)
- tex(latex)
Provides2
- python-pysb-doc = 1.16.0-19.fc45
- python3-pysb = 1.16.0-19.fc45
ObsoletesNo Obsoletes
ConflictsNo Conflicts
RecommendsNo Recommends
SuggestsNo Suggests
SupplementsNo Supplements
EnhancesNo Enhances
Files
3Name ![]() |
Size |
|---|---|
| pysb-1.16.0.tar.gz | 376.51 KB |
| python-pysb-rm-python-mock-usage.diff | 604.00 B |
| python-pysb.spec | 11.49 KB |
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