Mon, 02 Nov 2026 11:29:05 UTC Log in
Rule-based modeling of biochemical systems as Python programs 401.22 KB built 2026-10-17 12:30:37 GMT

Description

PySB is a framework for building mathematical models of biochemical systems as Python programs. PySB abstracts the complex process of creating equations describing interactions among multiple proteins or other biomolecules into a simple and intuitive domain specific programming language, which is internally translated into BioNetGen or Kappa rules and from there into systems of equations. PySB makes it straightforward to divide models into modules and to call libraries of reusable elements (macros) that encode standard biochemical actions. These features promote model transparency, reuse and accuracy. PySB also interoperates with standard scientific Python libraries such as NumPy, SciPy and SymPy enabling model simulation and analysis.

Dependencies

14 total
Requires12
  • dvipng
  • make
  • perl-macros
  • python3-devel
  • python3-ipython-sphinx
  • python3-setuptools < 82
  • python3-sphinx
  • python3dist(numpydoc)
  • rpmlib(CompressedFileNames) <= 3.0.4-1
  • rpmlib(FileDigests) <= 4.6.0-1
  • tex(anyfontsize.sty)
  • tex(latex)
Provides2
  • python-pysb-doc = 1.16.0-19.fc45
  • python3-pysb = 1.16.0-19.fc45
ObsoletesNo Obsoletes
ConflictsNo Conflicts
RecommendsNo Recommends
SuggestsNo Suggests
SupplementsNo Supplements
EnhancesNo Enhances

Files

3
Files 1–3 of 3

Component of

buildroots that installed this RPM

No Buildroots