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Q-value estimation for false discovery rate control 2.70 MB built 2026-10-13 04:27:30 GMT

Description

It takes a list of p-values resulting from the simultaneous testing of many hypotheses and estimates their q-values. The q-value of a test measures the proportion of false positives incurred (called the false discovery rate) when that particular test is called significant. Various plots are automatically generated, allowing one to make sensible significance cut-offs. Several mathematical results have recently been shown on the conservative accuracy of the estimated q-values from this software. The software can be applied to problems in genomics, brain imaging, astrophysics, and data mining.

Dependencies

13 total
Requires11
  • R(ABI) = 4.4
  • R(ggplot2)
  • R(grid)
  • R(reshape2)
  • R(splines)
  • R-core >= 2.10
  • rpmlib(CompressedFileNames) <= 3.0.4-1
  • rpmlib(FileDigests) <= 4.6.0-1
  • rpmlib(PartialHardlinkSets) <= 4.0.4-1
  • rpmlib(PayloadFilesHavePrefix) <= 4.0-1
  • rpmlib(PayloadIsZstd) <= 5.4.18-1
Provides2
  • R(qvalue) = 2.42.0
  • R-qvalue = 2.42.0-5.fc45
ObsoletesNo Obsoletes
ConflictsNo Conflicts
RecommendsNo Recommends
SuggestsNo Suggests
SupplementsNo Supplements
EnhancesNo Enhances

Files

56
Name ascending sort Size
/usr/share/R/library/qvalue 0.00 B
/usr/share/R/library/qvalue/DESCRIPTION 1.82 KB
/usr/share/R/library/qvalue/INDEX 696.00 B
/usr/share/R/library/qvalue/Meta 0.00 B
/usr/share/R/library/qvalue/Meta/Rd.rds 660.00 B
/usr/share/R/library/qvalue/Meta/data.rds 159.00 B
/usr/share/R/library/qvalue/Meta/features.rds 126.00 B
/usr/share/R/library/qvalue/Meta/hsearch.rds 694.00 B
/usr/share/R/library/qvalue/Meta/links.rds 238.00 B
/usr/share/R/library/qvalue/Meta/nsInfo.rds 331.00 B
/usr/share/R/library/qvalue/Meta/package.rds 1.41 KB
/usr/share/R/library/qvalue/Meta/vignette.rds 198.00 B
/usr/share/R/library/qvalue/NAMESPACE 360.00 B
/usr/share/R/library/qvalue/NEWS 314.00 B
/usr/share/R/library/qvalue/R 0.00 B
/usr/share/R/library/qvalue/R/qvalue 1.03 KB
/usr/share/R/library/qvalue/R/qvalue.rdb 25.44 KB
/usr/share/R/library/qvalue/R/qvalue.rdx 379.00 B
/usr/share/R/library/qvalue/data 0.00 B
/usr/share/R/library/qvalue/data/datalist 10.00 B
/usr/share/R/library/qvalue/data/hedenfalk.RData 2.34 MB
/usr/share/R/library/qvalue/doc 0.00 B
/usr/share/R/library/qvalue/doc/index.html 1.33 KB
/usr/share/R/library/qvalue/doc/qvalue.R 2.58 KB
/usr/share/R/library/qvalue/doc/qvalue.Rnw 21.08 KB
/usr/share/R/library/qvalue/doc/qvalue.pdf 284.52 KB
/usr/share/R/library/qvalue/help 0.00 B
/usr/share/R/library/qvalue/help/AnIndex 240.00 B
/usr/share/R/library/qvalue/help/aliases.rds 174.00 B
/usr/share/R/library/qvalue/help/empPvals.html 150.00 B
/usr/share/R/library/qvalue/help/hedenfalk.html 151.00 B
/usr/share/R/library/qvalue/help/hist+2C.html 153.00 B
/usr/share/R/library/qvalue/help/hist.qvalue.html 153.00 B
/usr/share/R/library/qvalue/help/lfdr.html 146.00 B
/usr/share/R/library/qvalue/help/paths.rds 211.00 B
/usr/share/R/library/qvalue/help/pi0est.html 148.00 B
/usr/share/R/library/qvalue/help/plot+2C.html 153.00 B
/usr/share/R/library/qvalue/help/plot.qvalue.html 153.00 B
/usr/share/R/library/qvalue/help/qvalue.html 148.00 B
/usr/share/R/library/qvalue/help/qvalue.rdb 33.81 KB
/usr/share/R/library/qvalue/help/qvalue.rdx 354.00 B
/usr/share/R/library/qvalue/help/summary+2C.html 156.00 B
/usr/share/R/library/qvalue/help/summary.qvalue.html 156.00 B
/usr/share/R/library/qvalue/help/write.qvalue.html 154.00 B
/usr/share/R/library/qvalue/html 0.00 B
/usr/share/R/library/qvalue/html/00Index.html 2.58 KB
/usr/share/R/library/qvalue/html/R.css 1.80 KB
/usr/share/R/library/qvalue/html/empPvals.html 4.55 KB
/usr/share/R/library/qvalue/html/hedenfalk.html 3.40 KB
/usr/share/R/library/qvalue/html/hist.qvalue.html 3.87 KB
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