Fri, 13 Nov 2026 10:18:41 UTC Log in
Standard Input and Output for Bioconductor Packages 415.56 KB built 2026-10-13 03:27:07 GMT

Description

Implements `import()` and `export()` standard generics for importing and exporting biological data formats. `import()` supports whole-file as well as chunk-wise iterative import. The `import()` interface optionally provides a standard mechanism for 'lazy' access via `filter()` (on row or element-like components of the file resource), `select()` (on column-like components of the file resource) and `collect()`. The `import()` interface optionally provides transparent access to remote (e.g. via https) as well as local access. Developers can register a file extension, e.g., `.loom` for dispatch from character-based URIs to specific `import()` / `export()` methods based on classes representing file types, e.g., `LoomFile()`.

Dependencies

13 total
Requires11
  • R(ABI) = 4.4
  • R(BiocGenerics)
  • R(S4Vectors)
  • R(methods)
  • R(tools)
  • R-core >= 4.3.0
  • rpmlib(CompressedFileNames) <= 3.0.4-1
  • rpmlib(FileDigests) <= 4.6.0-1
  • rpmlib(PartialHardlinkSets) <= 4.0.4-1
  • rpmlib(PayloadFilesHavePrefix) <= 4.0-1
  • rpmlib(PayloadIsZstd) <= 5.4.18-1
Provides2
  • R(BiocIO) = 1.20.0
  • R-BiocIO = 1.20.0-5.fc45
ObsoletesNo Obsoletes
ConflictsNo Conflicts
RecommendsNo Recommends
SuggestsNo Suggests
SupplementsNo Supplements
EnhancesNo Enhances

Files

74
Name ascending sort Size
/usr/share/R/library/BiocIO 0.00 B
/usr/share/R/library/BiocIO/DESCRIPTION 2.19 KB
/usr/share/R/library/BiocIO/INDEX 130.00 B
/usr/share/R/library/BiocIO/Meta 0.00 B
/usr/share/R/library/BiocIO/Meta/Rd.rds 572.00 B
/usr/share/R/library/BiocIO/Meta/features.rds 126.00 B
/usr/share/R/library/BiocIO/Meta/hsearch.rds 630.00 B
/usr/share/R/library/BiocIO/Meta/links.rds 434.00 B
/usr/share/R/library/BiocIO/Meta/nsInfo.rds 448.00 B
/usr/share/R/library/BiocIO/Meta/package.rds 1.60 KB
/usr/share/R/library/BiocIO/Meta/vignette.rds 194.00 B
/usr/share/R/library/BiocIO/NAMESPACE 894.00 B
/usr/share/R/library/BiocIO/NEWS.md 370.00 B
/usr/share/R/library/BiocIO/R 0.00 B
/usr/share/R/library/BiocIO/R/BiocIO 1.03 KB
/usr/share/R/library/BiocIO/R/BiocIO.rdb 206.52 KB
/usr/share/R/library/BiocIO/R/BiocIO.rdx 1.45 KB
/usr/share/R/library/BiocIO/doc 0.00 B
/usr/share/R/library/BiocIO/doc/BiocIO.R 1.76 KB
/usr/share/R/library/BiocIO/doc/BiocIO.Rmd 5.12 KB
/usr/share/R/library/BiocIO/doc/BiocIO.html 625.44 KB
/usr/share/R/library/BiocIO/doc/index.html 1.33 KB
/usr/share/R/library/BiocIO/help 0.00 B
/usr/share/R/library/BiocIO/help/AnIndex 1.33 KB
/usr/share/R/library/BiocIO/help/BiocFile-class.html 156.00 B
/usr/share/R/library/BiocIO/help/BiocFile.html 156.00 B
/usr/share/R/library/BiocIO/help/BiocFileList-class.html 156.00 B
/usr/share/R/library/BiocIO/help/BiocFileList.html 156.00 B
/usr/share/R/library/BiocIO/help/BiocIO.rdb 13.23 KB
/usr/share/R/library/BiocIO/help/BiocIO.rdx 218.00 B
/usr/share/R/library/BiocIO/help/CompressedFile-class.html 153.00 B
/usr/share/R/library/BiocIO/help/FileForFormat.html 156.00 B
/usr/share/R/library/BiocIO/help/IO.html 144.00 B
/usr/share/R/library/BiocIO/help/aliases.rds 407.00 B
/usr/share/R/library/BiocIO/help/as.character+2CBiocFile-method.html 156.00 B
/usr/share/R/library/BiocIO/help/compress.html 153.00 B
/usr/share/R/library/BiocIO/help/compression.html 153.00 B
/usr/share/R/library/BiocIO/help/decompress+2CANY-method.html 153.00 B
/usr/share/R/library/BiocIO/help/decompress+2CCompressedFile-method.html 153.00 B
/usr/share/R/library/BiocIO/help/decompress+2CGZFile-method.html 153.00 B
/usr/share/R/library/BiocIO/help/decompress+2Ccharacter-method.html 153.00 B
/usr/share/R/library/BiocIO/help/decompress.html 153.00 B
/usr/share/R/library/BiocIO/help/export+2CANY+2CCompressedFile+2Cmissing-method.html 144.00 B
/usr/share/R/library/BiocIO/help/export+2CANY+2Ccharacter+2Ccharacter-method.html 144.00 B
/usr/share/R/library/BiocIO/help/export+2CANY+2Ccharacter+2Cmissing-method.html 144.00 B
/usr/share/R/library/BiocIO/help/export+2CANY+2Cconnection+2Ccharacter-method.html 144.00 B
/usr/share/R/library/BiocIO/help/export+2CANY+2Cconnection+2Cmissing-method.html 144.00 B
/usr/share/R/library/BiocIO/help/export+2CANY+2Cmissing+2Ccharacter-method.html 144.00 B
/usr/share/R/library/BiocIO/help/export.html 144.00 B
/usr/share/R/library/BiocIO/help/fileFormat+2CBiocFile-method.html 156.00 B
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