Fast and scalable spike sorting of large-scale extracellular recordings
built by guoguo
completed Thu, 29 Oct 2026 23:37:00 UTC
Description
SpyKING CIRCUS is a python code to allow fast spike sorting on multi channel
recordings. A publication on the algorithm can be found at
https://elifesciences.org/articles/34518.
It has been tested on datasets coming from in vitro retina with 252 electrodes
MEA, from in vivo hippocampus with tetrodes, in vivo and in vitro cortex data
with 30 and up to 4225 channels, with good results. Synthetic tests on these
data show that cells firing at more than 0.5Hz can be detected, and their
spikes recovered with error rates at around 1%, even resolving overlapping
spikes and synchronous firing. It seems to be compatible with optogenetic
stimulation, based on experimental data obtained in the retina.
RPMs
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Changelog
* Thu Jul 16 2026 Fedora Release Engineering <releng@fedoraproject.org> - 1.1.0-24 - Rebuilt for https://fedoraproject.org/wiki/Fedora_45_Mass_Rebuild * Thu Jun 04 2026 Python Maint <python-maint@redhat.com> - 1.1.0-23 - Rebuilt for Python 3.15 * Tue May 12 2026 Miro Hrončok <miro@hroncok.cz> - 1.1.0-22 - Add runtime dependency on python3-pkg-resources * Sat Jan 31 2026 Ankur Sinha (Ankur Sinha Gmail) <sanjay.ankur@gmail.com> - 1.1.0-21 - feat: use spdx identifier * Sat Jan 17 2026 Fedora Release Engineering <releng@fedoraproject.org> - 1.1.0-20 - Rebuilt for https://fedoraproject.org/wiki/Fedora_44_Mass_Rebuild * Fri Sep 19 2025 Python Maint <python-maint@redhat.com> - 1.1.0-19 - Rebuilt for Python 3.14.0rc3 bytecode * Fri Aug 15 2025 Python Maint <python-maint@redhat.com> - 1.1.0-18 - Rebuilt for Python 3.14.0rc2 bytecode * Fri Jul 25 2025 Fedora Release Engineering <releng@fedoraproject.org> - 1.1.0-17 - Rebuilt for https://fedoraproject.org/wiki/Fedora_43_Mass_Rebuild * Tue Jun 03 2025 Python Maint <python-maint@redhat.com> - 1.1.0-16 - Rebuilt for Python 3.14 * Sat Jan 18 2025 Fedora Release Engineering <releng@fedoraproject.org> - 1.1.0-15 - Rebuilt for https://fedoraproject.org/wiki/Fedora_42_Mass_Rebuild * Wed Sep 04 2024 Miroslav Suchý <msuchy@redhat.com> - 1.1.0-14 - convert license to SPDX * Fri Jul 19 2024 Fedora Release Engineering <releng@fedoraproject.org> - 1.1.0-13 - Rebuilt for https://fedoraproject.org/wiki/Fedora_41_Mass_Rebuild