Mock Version: 6.5
Mock Version: 6.5
Mock Version: 6.5
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target riscv64 --nodeps /builddir/build/SPECS/vcftools.spec'], chrootPath='/var/lib/mock/f45-build-38006-718/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x3f96d92e90>timeout=864000uid=995gid=135user='mockbuild'unshare_net=TrueprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.3il5o0pd:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'])
Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.3il5o0pd:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '8702216de1b94eddb8d98c71f877de12', '-D', '/var/lib/mock/f45-build-38006-718/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.3il5o0pd:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target riscv64 --nodeps /builddir/build/SPECS/vcftools.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: riscv64
Building for target riscv64
sh: line 1: perl: command not found
setting SOURCE_DATE_EPOCH=1784246400
Wrote: /builddir/build/SRPMS/vcftools-0.1.17-3.fc45.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --noclean --target riscv64 --nodeps /builddir/build/SPECS/vcftools.spec'], chrootPath='/var/lib/mock/f45-build-38006-718/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x3f96d92e90>timeout=864000uid=995gid=135user='mockbuild'unshare_net=TrueprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.3il5o0pd:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'])
Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.3il5o0pd:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'dc9c1b2f7720499fa152400062b7bfa0', '-D', '/var/lib/mock/f45-build-38006-718/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.3il5o0pd:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --noclean --target riscv64 --nodeps /builddir/build/SPECS/vcftools.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: riscv64
Building for target riscv64
setting SOURCE_DATE_EPOCH=1784246400
Executing(mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.MCyvy7
Creating(rpmbuild.env): /builddir/build/BUILD/vcftools-0.1.17-build/rpmbuild.env
  RPM_SOURCE_DIR="/builddir/build/SOURCES"
  RPM_BUILD_DIR="/builddir/build/BUILD/vcftools-0.1.17-build"
  RPM_OPT_FLAGS="-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer"
  RPM_LD_FLAGS="-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  "
  RPM_ARCH="riscv64"
  RPM_OS="linux"
  RPM_BUILD_NCPUS="8"
  RPM_SPECPARTS_DIR="/builddir/build/BUILD/vcftools-0.1.17-build/SPECPARTS"
  export RPM_SOURCE_DIR RPM_BUILD_DIR RPM_OPT_FLAGS RPM_ARCH RPM_OS RPM_BUILD_NCPUS RPM_SPECPARTS_DIR RPM_LD_FLAGS
  RPM_DOC_DIR="/usr/share/doc"
  export RPM_DOC_DIR
  RPM_PACKAGE_NAME="vcftools"
  RPM_PACKAGE_VERSION="0.1.17"
  RPM_PACKAGE_RELEASE="3.fc45"
  export RPM_PACKAGE_NAME RPM_PACKAGE_VERSION RPM_PACKAGE_RELEASE
  LANG=C.UTF-8
  export LANG
  unset CDPATH DISPLAY ||:
  unset DEBUGINFOD_URLS ||:
  unset RPM_CONFIG_DIR ||:
  RPM_BUILD_ROOT="/builddir/build/BUILD/vcftools-0.1.17-build/BUILDROOT"
  export RPM_BUILD_ROOT
  
  PKG_CONFIG_PATH="${PKG_CONFIG_PATH}:/usr/lib64/pkgconfig:/usr/share/pkgconfig"
  export PKG_CONFIG_PATH
  CONFIG_SITE=${CONFIG_SITE:-NONE}
  export CONFIG_SITE
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.usuXrL
+ umask 022
+ cd /builddir/build/BUILD/vcftools-0.1.17-build
+ cd /builddir/build/BUILD/vcftools-0.1.17-build
+ rm -rf vcftools-0.1.17
+ /usr/bin/rpmuncompress -x /builddir/build/SOURCES/vcftools-0.1.17.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd vcftools-0.1.17
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.imlKxb
+ umask 022
+ cd /builddir/build/BUILD/vcftools-0.1.17-build
+ CFLAGS='-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CFLAGS
+ CXXFLAGS='-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CXXFLAGS
+ FFLAGS='-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd vcftools-0.1.17
+ CFLAGS='-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CFLAGS
+ CXXFLAGS='-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CXXFLAGS
+ FFLAGS='-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ '[' x '!=' x ']'
+ '[' 1 = 1 ']'
+++ dirname ./configure
++ find . -name config.guess -o -name config.sub
+ '[' 1 = 1 ']'
+ '[' x '!=' 'x-Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors' ']'
++ find . -name ltmain.sh
++ grep -q runstatedir=DIR ./configure
++ echo --runstatedir=/run
+ ./configure --build=riscv64-koji-linux-gnu --host=riscv64-koji-linux-gnu --program-prefix= --disable-dependency-tracking --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/bin --sysconfdir=/etc --datadir=/usr/share --includedir=/usr/include --libdir=/usr/lib64 --libexecdir=/usr/libexec --localstatedir=/var --runstatedir=/run --sharedstatedir=/var/lib --mandir=/usr/share/man --infodir=/usr/share/info --with-pmdir=share/perl5/vendor_perl
checking for a BSD-compatible install... /usr/bin/install -c
checking whether sleep supports fractional seconds... yes
checking filesystem timestamp resolution... 0.01
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking xargs -n works... yes
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether g++ accepts -g... yes
checking for g++ option to enable C++11 features... -std=gnu++11
checking whether make supports the include directive... yes (GNU style)
checking dependency style of g++ -std=gnu++11... none
checking for riscv64-koji-linux-gnu-gcc... gcc
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... none
checking how to run the C preprocessor... gcc -E
checking for perl... /usr/bin/perl
checking for riscv64-koji-linux-gnu-pkg-config... no
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for zlib... yes
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for arpa/inet.h... yes
checking for fcntl.h... yes
checking for limits.h... yes
checking for netdb.h... yes
checking for stdint.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for sys/socket.h... yes
checking for unistd.h... (cached) yes
checking for _Bool... yes
checking for stdbool.h that conforms to C99 or later... yes
checking for inline... inline
checking for int16_t... yes
checking for int32_t... yes
checking for int64_t... yes
checking for int8_t... yes
checking for off_t... yes
checking for size_t... yes
checking for ssize_t... yes
checking for uint16_t... yes
checking for uint32_t... yes
checking for uint8_t... yes
checking for gcc option to enable large file support... none needed
checking for error_at_line... yes
checking for gethostbyaddr... yes
checking for gethostbyname... yes
checking for malloc... yes
checking for memset... yes
checking for pow... no
checking for realloc... yes
checking for select... yes
checking for socket... yes
checking for sqrt... no
checking for strchr... yes
checking for strdup... yes
checking for strerror... yes
checking for strstr... yes
checking for strtol... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/cpp/Makefile
config.status: creating src/perl/Makefile
config.status: creating config.h
config.status: executing depfiles commands
+ /usr/bin/make -O -j8 V=1 VERBOSE=1
/usr/bin/make  all-recursive
Making all in src
Making all in cpp
make[3]: Entering directory '/builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17/src/cpp'
g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I../..  -DWITH_GZFILEOP   -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o vcftools-dgeev.o `test -f 'dgeev.cpp' || echo './'`dgeev.cpp
make[3]: Leaving directory '/builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17/src/cpp'
make[3]: Entering directory '/builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17/src/cpp'
gcc -DHAVE_CONFIG_H -I. -I../..  -DWITH_GZFILEOP   -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o vcftools-bgzf.o `test -f 'bgzf.c' || echo './'`bgzf.c
bgzf.c: In function ‘bgzf_check_EOF’:
bgzf.c:60:34: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   60 | #define _bgzf_read(fp, buf, len) fread((buf), 1, (len), (FILE*)(fp))
      |                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bgzf.c:622:9: note: in expansion of macro ‘_bgzf_read’
  622 |         _bgzf_read(fp->fp, buf, 28);
      |         ^~~~~~~~~~
make[3]: Leaving directory '/builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17/src/cpp'
make[3]: Entering directory '/builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17/src/cpp'
g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I../..  -DWITH_GZFILEOP   -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o vcftools-gamma.o `test -f 'gamma.cpp' || echo './'`gamma.cpp
make[3]: Leaving directory '/builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17/src/cpp'
make[3]: Entering directory '/builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17/src/cpp'
g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I../..  -DWITH_GZFILEOP   -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o vcftools-entry_setters.o `test -f 'entry_setters.cpp' || echo './'`entry_setters.cpp
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gcc -DHAVE_CONFIG_H -I. -I../..  -DWITH_GZFILEOP   -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o vcftools-knetfile.o `test -f 'knetfile.c' || echo './'`knetfile.c
In file included from knetfile.c:46:
knetfile.c: In function ‘kftp_send_cmd’:
knetfile.h:9:32: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
    9 | #define netwrite(fd, ptr, len) write(fd, ptr, len)
      |                                ^~~~~~~~~~~~~~~~~~~
knetfile.c:236:9: note: in expansion of macro ‘netwrite’
  236 |         netwrite(ftp->ctrl_fd, cmd, strlen(cmd));
      |         ^~~~~~~~
knetfile.c: In function ‘khttp_connect_file’:
knetfile.h:9:32: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
    9 | #define netwrite(fd, ptr, len) write(fd, ptr, len)
      |                                ^~~~~~~~~~~~~~~~~~~
knetfile.c:415:9: note: in expansion of macro ‘netwrite’
  415 |         netwrite(fp->fd, buf, l);
      |         ^~~~~~~~
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g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I../..  -DWITH_GZFILEOP   -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o vcftools-entry.o `test -f 'entry.cpp' || echo './'`entry.cpp
entry.cpp: In member function ‘int entry::get_typed_int(unsigned int*, const std::vector<char>&, unsigned int&, unsigned int&)’:
entry.cpp:762:16: warning: ‘out’ may be used uninitialized [-Wmaybe-uninitialized]
  762 |         return out;
      |                ^~~
entry.cpp:731:13: note: ‘out’ was declared here
  731 |         int out;
      |             ^~~
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g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I../..  -DWITH_GZFILEOP   -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o vcftools-entry_getters.o `test -f 'entry_getters.cpp' || echo './'`entry_getters.cpp
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g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I../..  -DWITH_GZFILEOP   -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o vcftools-output_log.o `test -f 'output_log.cpp' || echo './'`output_log.cpp
output_log.cpp: In member function ‘void output_log::printLOG(std::string)’:
output_log.cpp:42:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   42 |         if (output_to_file)
      |         ^~
output_log.cpp:43:27: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   43 |                 LOG << s; LOG.flush();
      |                           ^~~
output_log.cpp:44:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
   44 |         if (output_to_screen)
      |         ^~
output_log.cpp:45:28: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
   45 |                 cerr << s; cerr.flush();
      |                            ^~~~
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g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I../..  -DWITH_GZFILEOP   -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o vcftools-bcf_entry_setters.o `test -f 'bcf_entry_setters.cpp' || echo './'`bcf_entry_setters.cpp
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g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I../..  -DWITH_GZFILEOP   -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o vcftools-bcf_file.o `test -f 'bcf_file.cpp' || echo './'`bcf_file.cpp
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g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I../..  -DWITH_GZFILEOP   -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o vcftools-entry_filters.o `test -f 'entry_filters.cpp' || echo './'`entry_filters.cpp
entry_filters.cpp: In member function ‘void entry::filter_sites_by_overlap_positions(const std::string&, const std::string&)’:
entry_filters.cpp:540:25: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  540 |                         for (unsigned int ui=POS; ui<(POS+REF.size()); ui++)
      |                         ^~~
entry_filters.cpp:544:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  544 |                                 if (found == true)
      |                                 ^~
entry_filters.cpp: In member function ‘void entry::filter_sites_by_frequency_and_call_rate(double, double, double, double, double, double, double)’:
entry_filters.cpp:814:77: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
  814 |         if (((min_non_ref_af > 0.0) || (max_non_ref_af < 1.0)) && (N_failed == (N_alleles-1)))
      |                                                                    ~~~~~~~~~^~~~~~~~~~~~~~~~
entry_filters.cpp: In member function ‘void entry::filter_sites_by_allele_count(double, double, double, double, double, double, double)’:
entry_filters.cpp:912:106: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
  912 |         if (((min_non_ref_ac_any > 0) || (max_non_ref_ac_any < numeric_limits<int>::max())) && (N_failed == (N_alleles-1)))
      |                                                                                                 ~~~~~~~~~^~~~~~~~~~~~~~~~
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g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I../..  -DWITH_GZFILEOP   -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o vcftools-variant_file.o `test -f 'variant_file.cpp' || echo './'`variant_file.cpp
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g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I../..  -DWITH_GZFILEOP   -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o vcftools-bcf_entry.o `test -f 'bcf_entry.cpp' || echo './'`bcf_entry.cpp
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g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I../..  -DWITH_GZFILEOP   -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o vcftools-variant_file_filters.o `test -f 'variant_file_filters.cpp' || echo './'`variant_file_filters.cpp
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g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I../..  -DWITH_GZFILEOP   -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o vcftools-header.o `test -f 'header.cpp' || echo './'`header.cpp
make[3]: Leaving directory '/builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17/src/cpp'
header.cpp: In static member function ‘static void header::split(const std::string&, char, std::vector<std::__cxx11::basic_string<char> >&)’:
header.cpp:487:46: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string<char>::size_type’ {aka ‘const long unsigned int’} [-Wsign-compare]
  487 |         while ((end = text.find(sep, start)) != string::npos)
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
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g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I../..  -DWITH_GZFILEOP   -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o vcftools-vcf_entry_setters.o `test -f 'vcf_entry_setters.cpp' || echo './'`vcf_entry_setters.cpp
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g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I../..  -DWITH_GZFILEOP   -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o vcftools-vcftools.o `test -f 'vcftools.cpp' || echo './'`vcftools.cpp
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g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I../..  -DWITH_GZFILEOP   -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o vcftools-vcf_file.o `test -f 'vcf_file.cpp' || echo './'`vcf_file.cpp
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g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I../..  -DWITH_GZFILEOP   -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o vcftools-vcf_entry.o `test -f 'vcf_entry.cpp' || echo './'`vcf_entry.cpp
vcf_entry.cpp: In member function ‘virtual void vcf_entry::parse_genotype_entry(unsigned int, bool, bool, bool, bool)’:
vcf_entry.cpp:135:59: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const std::__cxx11::basic_string<char>::size_type’ {aka ‘const long unsigned int’} [-Wsign-compare]
  135 |         while ((end = GENOTYPE_str[indv].find(':',start)) != string::npos)
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
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g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I../..  -DWITH_GZFILEOP   -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o vcftools-variant_file_format_convert.o `test -f 'variant_file_format_convert.cpp' || echo './'`variant_file_format_convert.cpp
variant_file_format_convert.cpp: In member function ‘void variant_file::output_as_LDhelmet(const parameters&)’:
variant_file_format_convert.cpp:1015:22: warning: unused variable ‘n_indv’ [-Wunused-variable]
 1015 |         unsigned int n_indv = N_kept_individuals();
      |                      ^~~~~~
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g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I../..  -DWITH_GZFILEOP   -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o vcftools-variant_file_diff.o `test -f 'variant_file_diff.cpp' || echo './'`variant_file_diff.cpp
variant_file_diff.cpp: In member function ‘void variant_file::output_sites_in_files(const parameters&, variant_file&)’:
variant_file_diff.cpp:219:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  219 |                                 if (POS2 < (POS1+REF1.size()))
      |                                     ~~~~~^~~~~~~~~~~~~~~~~~~~
variant_file_diff.cpp:235:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  235 |                                 if (POS1 < (POS2+REF2.size()))
      |                                     ~~~~~^~~~~~~~~~~~~~~~~~~~
variant_file_diff.cpp: In member function ‘void variant_file::output_discordance_by_site(const parameters&, variant_file&)’:
variant_file_diff.cpp:839:30: warning: variable ‘N_missing_1’ set but not used [-Wunused-but-set-variable=]
  839 |                 unsigned int N_missing_1=0, N_missing_2=0;
      |                              ^~~~~~~~~~~
variant_file_diff.cpp:839:45: warning: variable ‘N_missing_2’ set but not used [-Wunused-but-set-variable=]
  839 |                 unsigned int N_missing_1=0, N_missing_2=0;
      |                                             ^~~~~~~~~~~
variant_file_diff.cpp:841:30: warning: variable ‘N_concord_non_missing’ set but not used [-Wunused-but-set-variable=]
  841 |                 unsigned int N_concord_non_missing=0;
      |                              ^~~~~~~~~~~~~~~~~~~~~
variant_file_diff.cpp: In member function ‘void variant_file::output_switch_error(const parameters&, variant_file&)’:
variant_file_diff.cpp:1407:38: warning: variable ‘N_common_called’ set but not used [-Wunused-but-set-variable=]
 1407 |                         unsigned int N_common_called=0; // Number of genotypes called in both files
      |                                      ^~~~~~~~~~~~~~~
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make[3]: Entering directory '/builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17/src/cpp'
g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I../..  -DWITH_GZFILEOP   -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o vcftools-parameters.o `test -f 'parameters.cpp' || echo './'`parameters.cpp
make[3]: Leaving directory '/builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17/src/cpp'
parameters.cpp: In member function ‘void parameters::print_params()’:
parameters.cpp:491:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  491 |     if (output_N_PCA_SNP_loadings != defaults.output_N_PCA_SNP_loadings)
      |     ^~
parameters.cpp:493:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  493 |         if (output_prefix != defaults.output_prefix) LOG.printLOG("\t--out " + output_prefix + "\n");
      |         ^~
make[3]: Entering directory '/builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17/src/cpp'
g++ -std=gnu++11 -DHAVE_CONFIG_H -I. -I../..  -DWITH_GZFILEOP   -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer   -c -o vcftools-variant_file_output.o `test -f 'variant_file_output.cpp' || echo './'`variant_file_output.cpp
variant_file_output.cpp: In member function ‘void variant_file::output_haplotype_r2(const parameters&)’:
variant_file_output.cpp:1540:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 1540 |         for(unsigned int ui=0; ui<site_count-1; ui++)
      |                                ~~^~~~~~~~~~~~~
variant_file_output.cpp:1547:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 1547 |                 for(uj=ui+1; uj<site_count; uj++)
      |                              ~~^~~~~~~~~~~
variant_file_output.cpp: In member function ‘void variant_file::output_genotype_r2(const parameters&)’:
variant_file_output.cpp:1713:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 1713 |         for(unsigned int ui=0; ui<count-1; ui++)
      |                                ~~^~~~~~~~
variant_file_output.cpp:1720:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 1720 |                 for(uj=ui+1; uj<count; uj++)
      |                              ~~^~~~~~
variant_file_output.cpp: In member function ‘void variant_file::output_interchromosomal_genotype_r2(const parameters&)’:
variant_file_output.cpp:2050:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 2050 |         for(unsigned int ui=0; ui<count-1; ui++)
      |                                ~~^~~~~~~~
variant_file_output.cpp:2057:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 2057 |                 for(uj=ui+1; uj<count; uj++)
      |                              ~~^~~~~~
variant_file_output.cpp: In member function ‘void variant_file::output_interchromosomal_haplotype_r2(const parameters&)’:
variant_file_output.cpp:2211:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 2211 |         for(unsigned int ui=0; ui<site_count-1; ui++)
      |                                ~~^~~~~~~~~~~~~
variant_file_output.cpp:2218:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 2218 |                 for(uj=ui+1; uj<site_count; uj++)
      |                              ~~^~~~~~~~~~~
variant_file_output.cpp: In member function ‘void variant_file::output_haplotype_r2_of_SNP_list_vs_all_others(const parameters&)’:
variant_file_output.cpp:2442:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 2442 |         for(unsigned int ui=0; ui<nlist; ui++)
      |                                ~~^~~~~~
variant_file_output.cpp: In member function ‘void variant_file::output_genotype_r2_of_SNP_list_vs_all_others(const parameters&)’:
variant_file_output.cpp:2675:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 2675 |         for(unsigned int ui=0; ui<nlist; ui++)
      |                                ~~^~~~~~
variant_file_output.cpp: In member function ‘void variant_file::output_haplotype_count(const parameters&)’:
variant_file_output.cpp:1372:9: warning: ‘idx’ may be used uninitialized [-Wmaybe-uninitialized]
 1372 |         if (idx == prev_idx)
      |         ^~
variant_file_output.cpp:1181:43: note: ‘idx’ was declared here
 1181 |         string CHROM; int POS1, POS2; int idx;
      |                                           ^~~
make[3]: Leaving directory '/builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17/src/cpp'
make[3]: Entering directory '/builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17/src/cpp'
g++ -std=gnu++11  -O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer    -Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes   -o vcftools vcftools-bcf_entry.o vcftools-bcf_entry_setters.o vcftools-bcf_file.o vcftools-bgzf.o vcftools-dgeev.o vcftools-entry.o vcftools-entry_filters.o vcftools-entry_getters.o vcftools-entry_setters.o vcftools-gamma.o vcftools-header.o vcftools-knetfile.o vcftools-output_log.o vcftools-parameters.o vcftools-variant_file.o vcftools-variant_file_diff.o vcftools-variant_file_filters.o vcftools-variant_file_format_convert.o vcftools-variant_file_output.o vcftools-vcf_entry.o vcftools-vcf_entry_setters.o vcftools-vcf_file.o vcftools-vcftools.o -lz 
make[3]: Leaving directory '/builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17/src/cpp'
Making all in perl
make[3]: Nothing to be done for 'all'.
make[3]: Nothing to be done for 'all-am'.
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.IvRQm4
+ umask 022
+ cd /builddir/build/BUILD/vcftools-0.1.17-build
+ '[' /builddir/build/BUILD/vcftools-0.1.17-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/vcftools-0.1.17-build/BUILDROOT
++ dirname /builddir/build/BUILD/vcftools-0.1.17-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/vcftools-0.1.17-build
+ mkdir /builddir/build/BUILD/vcftools-0.1.17-build/BUILDROOT
+ CFLAGS='-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CFLAGS
+ CXXFLAGS='-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CXXFLAGS
+ FFLAGS='-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd vcftools-0.1.17
+ /usr/bin/make install DESTDIR=/builddir/build/BUILD/vcftools-0.1.17-build/BUILDROOT 'INSTALL=/usr/bin/install -p'
Making install in src
make[1]: Entering directory '/builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17/src'
Making install in cpp
make[2]: Entering directory '/builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17/src/cpp'
make[3]: Entering directory '/builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17/src/cpp'
 /usr/bin/mkdir -p '/builddir/build/BUILD/vcftools-0.1.17-build/BUILDROOT/usr/bin'
  /usr/bin/install -p vcftools '/builddir/build/BUILD/vcftools-0.1.17-build/BUILDROOT/usr/bin'
 /usr/bin/mkdir -p '/builddir/build/BUILD/vcftools-0.1.17-build/BUILDROOT/usr/share/man/man1'
 /usr/bin/install -p -m 644 vcftools.1 '/builddir/build/BUILD/vcftools-0.1.17-build/BUILDROOT/usr/share/man/man1'
make[3]: Leaving directory '/builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17/src/cpp'
make[2]: Leaving directory '/builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17/src/cpp'
Making install in perl
make[2]: Entering directory '/builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17/src/perl'
make[3]: Entering directory '/builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17/src/perl'
 /usr/bin/mkdir -p '/builddir/build/BUILD/vcftools-0.1.17-build/BUILDROOT/usr/bin'
 /usr/bin/install -p fill-aa fill-an-ac fill-fs fill-ref-md5 vcf-annotate vcf-compare vcf-concat vcf-consensus vcf-contrast vcf-convert vcf-fix-newlines vcf-fix-ploidy vcf-indel-stats vcf-isec vcf-merge vcf-phased-join vcf-query vcf-shuffle-cols vcf-sort vcf-stats vcf-subset vcf-to-tab vcf-tstv vcf-validator '/builddir/build/BUILD/vcftools-0.1.17-build/BUILDROOT/usr/bin'
 /usr/bin/mkdir -p '/builddir/build/BUILD/vcftools-0.1.17-build/BUILDROOT/usr/share/perl5/vendor_perl'
 /usr/bin/install -p -m 644 FaSlice.pm Vcf.pm VcfStats.pm '/builddir/build/BUILD/vcftools-0.1.17-build/BUILDROOT/usr/share/perl5/vendor_perl'
make[3]: Leaving directory '/builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17/src/perl'
make[2]: Leaving directory '/builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17/src/perl'
make[2]: Entering directory '/builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17/src'
make[3]: Entering directory '/builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17/src'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17/src'
make[2]: Leaving directory '/builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17/src'
make[1]: Leaving directory '/builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17/src'
make[1]: Entering directory '/builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17'
make[2]: Entering directory '/builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17'
make[2]: Nothing to be done for 'install-exec-am'.
make[2]: Nothing to be done for 'install-data-am'.
make[2]: Leaving directory '/builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17'
make[1]: Leaving directory '/builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17'
+ /usr/bin/find-debuginfo -j8 --strict-build-id -m -i --build-id-seed 0.1.17-3.fc45 --unique-debug-suffix -0.1.17-3.fc45.riscv64 --unique-debug-src-base vcftools-0.1.17-3.fc45.riscv64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 --remove-section .gnu.build.attributes -S debugsourcefiles.list /builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17
find-debuginfo: starting
Extracting debug info from 1 files
DWARF-compressing 1 files
sepdebugcrcfix: Updated 1 CRC32s, 0 CRC32s did match.
Creating .debug symlinks for symlinks to ELF files
Copying sources found by 'debugedit -l' to /usr/src/debug/vcftools-0.1.17-3.fc45.riscv64
find-debuginfo: done
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ COMPRESS='gzip -9 -n'
+ COMPRESS_EXT=.gz
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
mangling shebang in /usr/bin/fill-aa from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/fill-an-ac from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/fill-fs from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/fill-ref-md5 from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/vcf-annotate from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/vcf-compare from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/vcf-concat from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/vcf-consensus from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/vcf-contrast from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/vcf-convert from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/vcf-fix-newlines from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/vcf-fix-ploidy from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/vcf-indel-stats from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/vcf-isec from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/vcf-merge from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/vcf-phased-join from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/vcf-query from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/vcf-shuffle-cols from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/vcf-sort from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/vcf-stats from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/vcf-subset from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/vcf-to-tab from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/vcf-tstv from /usr/bin/env perl to #!/usr/bin/perl
mangling shebang in /usr/bin/vcf-validator from /usr/bin/env perl to #!/usr/bin/perl
+ /usr/lib/rpm/brp-remove-la-files
+ /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j8
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-det --brp -j8 /builddir/build/BUILD/vcftools-0.1.17-build/BUILDROOT
Scanned 17 directories and 64 files,
    processed 1 inodes,
    0 modified (0 replaced + 0 rewritten),
    0 unsupported format, 0 errors
+ /usr/bin/linkdupes --brp /builddir/build/BUILD/vcftools-0.1.17-build/BUILDROOT/usr
Scanned 16 directories and 64 files,
    considered 64 files, read 0 files, linked 0 files, 0 errors
    sum of sizes of linked files: 0 bytes
Reading /builddir/build/BUILD/vcftools-0.1.17-build/SPECPARTS/rpm-debuginfo.specpart
Executing(%check): /bin/sh -e /var/tmp/rpm-tmp.vj9Ouk
+ umask 022
+ cd /builddir/build/BUILD/vcftools-0.1.17-build
+ CFLAGS='-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CFLAGS
+ CXXFLAGS='-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CXXFLAGS
+ FFLAGS='-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2  -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes  '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib64:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd vcftools-0.1.17
+ make check
Making check in src
make[1]: Entering directory '/builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17/src'
Making check in cpp
make[2]: Entering directory '/builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17/src/cpp'
make[2]: Nothing to be done for 'check'.
make[2]: Leaving directory '/builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17/src/cpp'
Making check in perl
make[2]: Entering directory '/builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17/src/perl'
make[2]: Nothing to be done for 'check'.
make[2]: Leaving directory '/builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17/src/perl'
make[2]: Entering directory '/builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17/src'
make[2]: Nothing to be done for 'check-am'.
make[2]: Leaving directory '/builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17/src'
make[1]: Leaving directory '/builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17/src'
make[1]: Entering directory '/builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17'
make[1]: Leaving directory '/builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17'
+ RPM_EC=0
++ jobs -p
+ exit 0
Processing files: vcftools-0.1.17-3.fc45.riscv64
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.xqwRmM
+ umask 022
+ cd /builddir/build/BUILD/vcftools-0.1.17-build
+ cd vcftools-0.1.17
+ DOCDIR=/builddir/build/BUILD/vcftools-0.1.17-build/BUILDROOT/usr/share/doc/vcftools
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/vcftools-0.1.17-build/BUILDROOT/usr/share/doc/vcftools
+ cp -pr /builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17/README.md /builddir/build/BUILD/vcftools-0.1.17-build/BUILDROOT/usr/share/doc/vcftools
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.LGwcn9
+ umask 022
+ cd /builddir/build/BUILD/vcftools-0.1.17-build
+ cd vcftools-0.1.17
+ LICENSEDIR=/builddir/build/BUILD/vcftools-0.1.17-build/BUILDROOT/usr/share/licenses/vcftools
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/vcftools-0.1.17-build/BUILDROOT/usr/share/licenses/vcftools
+ cp -pr /builddir/build/BUILD/vcftools-0.1.17-build/vcftools-0.1.17/LICENSE /builddir/build/BUILD/vcftools-0.1.17-build/BUILDROOT/usr/share/licenses/vcftools
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: perl(FaSlice) perl(Vcf) = 0.1.14 perl(Vcf3_2) perl(Vcf3_3) perl(Vcf4_0) perl(Vcf4_1) perl(Vcf4_2) perl(Vcf4_3) perl(VcfReader) perl(VcfStats) vcftools = 0.1.17-3.fc45 vcftools(riscv-64) = 0.1.17-3.fc45
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/perl ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libgcc_s.so.1()(64bit) libgcc_s.so.1(GCC_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libstdc++.so.6()(64bit) libstdc++.so.6(CXXABI_1.3)(64bit) libstdc++.so.6(GLIBCXX_3.4)(64bit) libstdc++.so.6(GLIBCXX_3.4.11)(64bit) libstdc++.so.6(GLIBCXX_3.4.20)(64bit) libstdc++.so.6(GLIBCXX_3.4.21)(64bit) libstdc++.so.6(GLIBCXX_3.4.30)(64bit) libstdc++.so.6(GLIBCXX_3.4.32)(64bit) libstdc++.so.6(GLIBCXX_3.4.9)(64bit) libz.so.1()(64bit) libz.so.1(ZLIB_1.2.0)(64bit) libz.so.1(ZLIB_1.2.3.5)(64bit) perl(Carp) perl(Data::Dumper) perl(Exporter) perl(FaSlice) perl(FindBin) perl(IO::Select) perl(IPC::Open2) perl(IPC::Open3) perl(List::Util) perl(POSIX) perl(Vcf) perl(VcfStats) perl(base) perl(lib) perl(strict) perl(vars) perl(warnings) perl-libs rtld(GNU_HASH)
Processing files: vcftools-debugsource-0.1.17-3.fc45.riscv64
Provides: vcftools-debugsource = 0.1.17-3.fc45 vcftools-debugsource(riscv-64) = 0.1.17-3.fc45
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Processing files: vcftools-debuginfo-0.1.17-3.fc45.riscv64
Provides: debuginfo(build-id) = e52dd89d581ead879bea5c64912bf729152dd8c8 vcftools-debuginfo = 0.1.17-3.fc45 vcftools-debuginfo(riscv-64) = 0.1.17-3.fc45
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Recommends: vcftools-debugsource(riscv-64) = 0.1.17-3.fc45
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/vcftools-0.1.17-build/BUILDROOT
Wrote: /builddir/build/RPMS/vcftools-debugsource-0.1.17-3.fc45.riscv64.rpm
Wrote: /builddir/build/RPMS/vcftools-0.1.17-3.fc45.riscv64.rpm
Wrote: /builddir/build/RPMS/vcftools-debuginfo-0.1.17-3.fc45.riscv64.rpm
Child return code was: 0