Mock Version: 6.5
Mock Version: 6.5
Mock Version: 6.5
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target noarch --nodeps /builddir/build/SPECS/python-pysb.spec'], chrootPath='/var/lib/mock/f45-build-32436-659/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x3fb6616e90>timeout=864000uid=995gid=135user='mockbuild'unshare_net=TrueprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.u3mwq_0h:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'])
Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.u3mwq_0h:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '206244e3704c4af29c2bb86766e5a51b', '-D', '/var/lib/mock/f45-build-32436-659/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.u3mwq_0h:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target noarch --nodeps /builddir/build/SPECS/python-pysb.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: noarch
Building for target noarch
setting SOURCE_DATE_EPOCH=1784160000
Wrote: /builddir/build/SRPMS/python-pysb-1.16.0-19.fc45.src.rpm
Child return code was: 0
ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bb --noclean --target noarch --nodeps /builddir/build/SPECS/python-pysb.spec'], chrootPath='/var/lib/mock/f45-build-32436-659/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=<mockbuild.trace_decorator.getLog object at 0x3fb6616e90>timeout=864000uid=995gid=135user='mockbuild'unshare_net=TrueprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.u3mwq_0h:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'])
Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.u3mwq_0h:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']
Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '5ef9e92b014c4f93ada4271fb86c5776', '-D', '/var/lib/mock/f45-build-32436-659/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.u3mwq_0h:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;<mock-chroot>\\007"', '--setenv=PS1=<mock-chroot> \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bb --noclean --target noarch --nodeps /builddir/build/SPECS/python-pysb.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;<mock-chroot>\\007"', 'PS1': '<mock-chroot> \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False
Building target platforms: noarch
Building for target noarch
warning: The %py3_build macro is deprecated and will likely stop working in Fedora 45. See the current Python packaging guidelines: https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/
warning: The %py3_install macro is deprecated and will likely stop working in Fedora 45. See the current Python packaging guidelines: https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/
setting SOURCE_DATE_EPOCH=1784160000
Executing(mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.tixStu
Creating(rpmbuild.env): /builddir/build/BUILD/python-pysb-1.16.0-build/rpmbuild.env
  RPM_SOURCE_DIR="/builddir/build/SOURCES"
  RPM_BUILD_DIR="/builddir/build/BUILD/python-pysb-1.16.0-build"
  RPM_OPT_FLAGS="-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer"
  RPM_LD_FLAGS="-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1   "
  RPM_ARCH="noarch"
  RPM_OS="linux"
  RPM_BUILD_NCPUS="8"
  RPM_SPECPARTS_DIR="/builddir/build/BUILD/python-pysb-1.16.0-build/SPECPARTS"
  export RPM_SOURCE_DIR RPM_BUILD_DIR RPM_OPT_FLAGS RPM_ARCH RPM_OS RPM_BUILD_NCPUS RPM_SPECPARTS_DIR RPM_LD_FLAGS
  RPM_DOC_DIR="/usr/share/doc"
  export RPM_DOC_DIR
  RPM_PACKAGE_NAME="python-pysb"
  RPM_PACKAGE_VERSION="1.16.0"
  RPM_PACKAGE_RELEASE="19.fc45"
  export RPM_PACKAGE_NAME RPM_PACKAGE_VERSION RPM_PACKAGE_RELEASE
  LANG=C.UTF-8
  export LANG
  unset CDPATH DISPLAY ||:
  unset DEBUGINFOD_URLS ||:
  unset RPM_CONFIG_DIR ||:
  RPM_BUILD_ROOT="/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT"
  export RPM_BUILD_ROOT
  
  PKG_CONFIG_PATH="${PKG_CONFIG_PATH}:/usr/lib/pkgconfig:/usr/share/pkgconfig"
  export PKG_CONFIG_PATH
  CONFIG_SITE=${CONFIG_SITE:-NONE}
  export CONFIG_SITE
Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.OwXXS7
+ umask 022
+ cd /builddir/build/BUILD/python-pysb-1.16.0-build
+ cd /builddir/build/BUILD/python-pysb-1.16.0-build
+ rm -rf pysb-1.16.0
+ /usr/bin/rpmuncompress -x /builddir/build/SOURCES/pysb-1.16.0.tar.gz
+ STATUS=0
+ '[' 0 -ne 0 ']'
+ cd pysb-1.16.0
+ /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w .
+ /usr/bin/rpmuncompress /builddir/build/SOURCES/python-pysb-rm-python-mock-usage.diff
+ /usr/bin/patch -p1 -s --fuzz=0 --no-backup-if-mismatch -f
+ sed -i -e 's|/usr/local/share/BioNetGen|/usr/share/perl5/vendor_perl/BioNetGen|' -e 's|'\''c:/Program Files/BioNetGen'\'',||' pysb/bng.py
+ sed -i -s '1 s|/usr/bin/env python|/usr/bin/python3|' pysb/examples/__init__.py pysb/examples/bax_pore.py pysb/examples/bax_pore_sequential.py pysb/examples/bngwiki_egfr_simple.py pysb/examples/bngwiki_enzymatic_cycle_mm.py pysb/examples/bngwiki_simple.py pysb/examples/earm_1_0.py pysb/examples/earm_1_3.py pysb/examples/explicit.py pysb/examples/expression_observables.py pysb/examples/fixed_initial.py pysb/examples/fricker_2010_apoptosis.py pysb/examples/hello_pysb.py pysb/examples/kinase_cascade.py pysb/examples/localfunc.py pysb/examples/michment.py pysb/examples/move_connected.py pysb/examples/robertson.py pysb/examples/run_bax_pore.py pysb/examples/run_bax_pore_sequential.py pysb/examples/run_bng_ssa_example.py pysb/examples/run_earm_1_0.py pysb/examples/run_earm_hpp.py pysb/examples/run_earm_stochkit.py pysb/examples/run_fixed_initial.py pysb/examples/run_kinase_cascade.py pysb/examples/run_michment.py pysb/examples/run_robertson.py pysb/examples/run_tutorial_a.py pysb/examples/run_tyson_oscillator.py pysb/examples/run_tyson_oscillator_stochkit.py pysb/examples/schloegl.py pysb/examples/synth_deg.py pysb/examples/tutorial_a.py pysb/examples/tutorial_b.py pysb/examples/tutorial_c.py pysb/examples/tyson_oscillator.py pysb/tools/__init__.py pysb/tools/render_reactions.py pysb/tools/render_species.py pysb/tools/sensitivity_analysis.py pysb/tools/species_graph.py
+ sed -r -i 's/'\''(sympy>=1.6),<1.12'\''/'\''\1'\''/; /'\''pynose'\''/d' setup.py
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.iHwOda
+ umask 022
+ cd /builddir/build/BUILD/python-pysb-1.16.0-build
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1   '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd pysb-1.16.0
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1   '
+ /usr/bin/python3 setup.py build '--executable=/usr/bin/python3 -sP'
/builddir/build/BUILD/python-pysb-1.16.0-build/pysb-1.16.0/ez_setup.py:151: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81.
  import pkg_resources
/usr/lib/python3.15/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
  warnings.warn(msg)
/usr/lib/python3.15/site-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!
        ********************************************************************************
        Please consider removing the following classifiers in favor of a SPDX license expression:
        License :: OSI Approved :: BSD License
        See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
        ********************************************************************************
!!
  self._finalize_license_expression()
running build
running build_py
creating build/lib/pysb
copying pysb/__init__.py -> build/lib/pysb
copying pysb/_version.py -> build/lib/pysb
copying pysb/anneal_mod.py -> build/lib/pysb
copying pysb/annotation.py -> build/lib/pysb
copying pysb/bng.py -> build/lib/pysb
copying pysb/builder.py -> build/lib/pysb
copying pysb/core.py -> build/lib/pysb
copying pysb/integrate.py -> build/lib/pysb
copying pysb/jacobian.py -> build/lib/pysb
copying pysb/kappa.py -> build/lib/pysb
copying pysb/logging.py -> build/lib/pysb
copying pysb/macros.py -> build/lib/pysb
copying pysb/pathfinder.py -> build/lib/pysb
copying pysb/pattern.py -> build/lib/pysb
copying pysb/util.py -> build/lib/pysb
creating build/lib/pysb/generator
copying pysb/generator/__init__.py -> build/lib/pysb/generator
copying pysb/generator/bng.py -> build/lib/pysb/generator
copying pysb/generator/kappa.py -> build/lib/pysb/generator
creating build/lib/pysb/importers
copying pysb/importers/__init__.py -> build/lib/pysb/importers
copying pysb/importers/bngl.py -> build/lib/pysb/importers
copying pysb/importers/json.py -> build/lib/pysb/importers
copying pysb/importers/sbml.py -> build/lib/pysb/importers
creating build/lib/pysb/tools
copying pysb/tools/__init__.py -> build/lib/pysb/tools
copying pysb/tools/render_reactions.py -> build/lib/pysb/tools
copying pysb/tools/render_species.py -> build/lib/pysb/tools
copying pysb/tools/sensitivity_analysis.py -> build/lib/pysb/tools
copying pysb/tools/species_graph.py -> build/lib/pysb/tools
creating build/lib/pysb/examples
copying pysb/examples/__init__.py -> build/lib/pysb/examples
copying pysb/examples/bax_pore.py -> build/lib/pysb/examples
copying pysb/examples/bax_pore_sequential.py -> build/lib/pysb/examples
copying pysb/examples/bngwiki_egfr_simple.py -> build/lib/pysb/examples
copying pysb/examples/bngwiki_enzymatic_cycle_mm.py -> build/lib/pysb/examples
copying pysb/examples/bngwiki_simple.py -> build/lib/pysb/examples
copying pysb/examples/earm_1_0.py -> build/lib/pysb/examples
copying pysb/examples/earm_1_3.py -> build/lib/pysb/examples
copying pysb/examples/explicit.py -> build/lib/pysb/examples
copying pysb/examples/expression_observables.py -> build/lib/pysb/examples
copying pysb/examples/fixed_initial.py -> build/lib/pysb/examples
copying pysb/examples/fricker_2010_apoptosis.py -> build/lib/pysb/examples
copying pysb/examples/hello_pysb.py -> build/lib/pysb/examples
copying pysb/examples/kinase_cascade.py -> build/lib/pysb/examples
copying pysb/examples/localfunc.py -> build/lib/pysb/examples
copying pysb/examples/michment.py -> build/lib/pysb/examples
copying pysb/examples/move_connected.py -> build/lib/pysb/examples
copying pysb/examples/robertson.py -> build/lib/pysb/examples
copying pysb/examples/run_bax_pore.py -> build/lib/pysb/examples
copying pysb/examples/run_bax_pore_sequential.py -> build/lib/pysb/examples
copying pysb/examples/run_bng_ssa_example.py -> build/lib/pysb/examples
copying pysb/examples/run_earm_1_0.py -> build/lib/pysb/examples
copying pysb/examples/run_earm_hpp.py -> build/lib/pysb/examples
copying pysb/examples/run_earm_stochkit.py -> build/lib/pysb/examples
copying pysb/examples/run_fixed_initial.py -> build/lib/pysb/examples
copying pysb/examples/run_kinase_cascade.py -> build/lib/pysb/examples
copying pysb/examples/run_michment.py -> build/lib/pysb/examples
copying pysb/examples/run_robertson.py -> build/lib/pysb/examples
copying pysb/examples/run_tutorial_a.py -> build/lib/pysb/examples
copying pysb/examples/run_tyson_oscillator.py -> build/lib/pysb/examples
copying pysb/examples/run_tyson_oscillator_stochkit.py -> build/lib/pysb/examples
copying pysb/examples/schloegl.py -> build/lib/pysb/examples
copying pysb/examples/synth_deg.py -> build/lib/pysb/examples
copying pysb/examples/tutorial_a.py -> build/lib/pysb/examples
copying pysb/examples/tutorial_b.py -> build/lib/pysb/examples
copying pysb/examples/tutorial_c.py -> build/lib/pysb/examples
copying pysb/examples/tyson_oscillator.py -> build/lib/pysb/examples
creating build/lib/pysb/export
copying pysb/export/__init__.py -> build/lib/pysb/export
copying pysb/export/__main__.py -> build/lib/pysb/export
copying pysb/export/bng_net.py -> build/lib/pysb/export
copying pysb/export/bngl.py -> build/lib/pysb/export
copying pysb/export/json.py -> build/lib/pysb/export
copying pysb/export/kappa.py -> build/lib/pysb/export
copying pysb/export/mathematica.py -> build/lib/pysb/export
copying pysb/export/matlab.py -> build/lib/pysb/export
copying pysb/export/potterswheel.py -> build/lib/pysb/export
copying pysb/export/pysb_flat.py -> build/lib/pysb/export
copying pysb/export/sbml.py -> build/lib/pysb/export
copying pysb/export/stochkit.py -> build/lib/pysb/export
creating build/lib/pysb/simulator
copying pysb/simulator/__init__.py -> build/lib/pysb/simulator
copying pysb/simulator/base.py -> build/lib/pysb/simulator
copying pysb/simulator/bng.py -> build/lib/pysb/simulator
copying pysb/simulator/cuda_ssa.py -> build/lib/pysb/simulator
copying pysb/simulator/cupsoda.py -> build/lib/pysb/simulator
copying pysb/simulator/kappa.py -> build/lib/pysb/simulator
copying pysb/simulator/opencl_ssa.py -> build/lib/pysb/simulator
copying pysb/simulator/scipyode.py -> build/lib/pysb/simulator
copying pysb/simulator/ssa_base.py -> build/lib/pysb/simulator
copying pysb/simulator/stochkit.py -> build/lib/pysb/simulator
creating build/lib/pysb/simulator/templates
copying pysb/simulator/templates/__init__.py -> build/lib/pysb/simulator/templates
creating build/lib/pysb/testing
copying pysb/testing/__init__.py -> build/lib/pysb/testing
copying pysb/testing/modeltests.py -> build/lib/pysb/testing
creating build/lib/pysb/tests
copying pysb/tests/__init__.py -> build/lib/pysb/tests
copying pysb/tests/jacobian_runtimes.py -> build/lib/pysb/tests
copying pysb/tests/test_bng.py -> build/lib/pysb/tests
copying pysb/tests/test_core.py -> build/lib/pysb/tests
copying pysb/tests/test_examples.py -> build/lib/pysb/tests
copying pysb/tests/test_exporters.py -> build/lib/pysb/tests
copying pysb/tests/test_expressions.py -> build/lib/pysb/tests
copying pysb/tests/test_importers.py -> build/lib/pysb/tests
copying pysb/tests/test_integrate.py -> build/lib/pysb/tests
copying pysb/tests/test_kappa.py -> build/lib/pysb/tests
copying pysb/tests/test_macros.py -> build/lib/pysb/tests
copying pysb/tests/test_pathfinder.py -> build/lib/pysb/tests
copying pysb/tests/test_pattern.py -> build/lib/pysb/tests
copying pysb/tests/test_sensitivity_analysis.py -> build/lib/pysb/tests
copying pysb/tests/test_simulationresult.py -> build/lib/pysb/tests
copying pysb/tests/test_simulator_bng.py -> build/lib/pysb/tests
copying pysb/tests/test_simulator_cuda_opencl_ssa.py -> build/lib/pysb/tests
copying pysb/tests/test_simulator_cupsoda.py -> build/lib/pysb/tests
copying pysb/tests/test_simulator_kappa.py -> build/lib/pysb/tests
copying pysb/tests/test_simulator_scipy.py -> build/lib/pysb/tests
copying pysb/tests/test_simulator_stochkit.py -> build/lib/pysb/tests
copying pysb/tests/test_util.py -> build/lib/pysb/tests
running egg_info
creating pysb.egg-info
writing pysb.egg-info/PKG-INFO
writing dependency_links to pysb.egg-info/dependency_links.txt
writing requirements to pysb.egg-info/requires.txt
writing top-level names to pysb.egg-info/top_level.txt
writing manifest file 'pysb.egg-info/SOURCES.txt'
reading manifest file 'pysb.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
no previously-included directories found matching 'doc/_build'
adding license file 'LICENSE.txt'
writing manifest file 'pysb.egg-info/SOURCES.txt'
copying pysb/simulator/tyche_i.h -> build/lib/pysb/simulator
copying pysb/simulator/templates/cuda_ssa.cu -> build/lib/pysb/simulator/templates
copying pysb/simulator/templates/opencl_ssa.cl -> build/lib/pysb/simulator/templates
UPDATING build/lib/pysb/_version.py
set build/lib/pysb/_version.py to '1.16.0'
running build_scripts
creating build/scripts-3.15
copying and adjusting scripts/pysb_export -> build/scripts-3.15
changing mode of build/scripts-3.15/pysb_export from 644 to 755
+ make -C doc html
make: Entering directory '/builddir/build/BUILD/python-pysb-1.16.0-build/pysb-1.16.0/doc'
sphinx-build -b html -d _build/doctrees   . _build/html
Running Sphinx v9.1.0
/builddir/build/BUILD/python-pysb-1.16.0-build/pysb-1.16.0/doc/conf.py:79: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81.
  import pysb, pkg_resources
loading translations [en]... done
making output directory... done
Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`.
[autosummary] generating autosummary for: faq.rst, index.rst, installation.rst, modules/bng.rst, modules/core.rst, modules/export/bng_net.rst, modules/export/bngl.rst, modules/export/index.rst, modules/export/json.rst, modules/export/kappa.rst, ..., modules/modeltests.rst, modules/pathfinder.rst, modules/pattern.rst, modules/simulator.rst, modules/tools/render.rst, modules/tools/render_reactions.rst, modules/tools/render_species.rst, modules/tools/sensitivity_analysis.rst, tutorial.rst, useful_references.rst
building [mo]: targets for 0 po files that are out of date
writing output... 
building [html]: targets for 31 source files that are out of date
updating environment: [new config] 31 added, 0 changed, 0 removed
reading sources... [  3%] faq
reading sources... [  6%] index
reading sources... [ 10%] installation
reading sources... [ 13%] modules/bng
reading sources... [ 16%] modules/core
reading sources... [ 19%] modules/export/bng_net
reading sources... [ 23%] modules/export/bngl
reading sources... [ 26%] modules/export/index
reading sources... [ 29%] modules/export/json
reading sources... [ 32%] modules/export/kappa
reading sources... [ 35%] modules/export/mathematica
reading sources... [ 39%] modules/export/matlab
reading sources... [ 42%] modules/export/potterswheel
reading sources... [ 45%] modules/export/pysb_flat
reading sources... [ 48%] modules/export/sbml
reading sources... [ 52%] modules/export/stochkit
reading sources... [ 55%] modules/importers/index
reading sources... [ 58%] modules/index
reading sources... [ 61%] modules/integrate
reading sources... [ 65%] modules/kappa
reading sources... [ 68%] modules/macros
reading sources... [ 71%] modules/modeltests
reading sources... [ 74%] modules/pathfinder
reading sources... [ 77%] modules/pattern
reading sources... [ 81%] modules/simulator
reading sources... [ 84%] modules/tools/render
reading sources... [ 87%] modules/tools/render_reactions
reading sources... [ 90%] modules/tools/render_species
reading sources... [ 94%] modules/tools/sensitivity_analysis
reading sources... [ 97%] tutorial
reading sources... [100%] useful_references
/builddir/build/BUILD/python-pysb-1.16.0-build/pysb-1.16.0/doc/tutorial.rst:939: WARNING: Footnote [#] is not referenced. [ref.footnote]
looking for now-outdated files... none found
pickling environment... done
checking consistency... done
preparing documents... done
copying assets... 
copying static files... 
Writing evaluated template result to /builddir/build/BUILD/python-pysb-1.16.0-build/pysb-1.16.0/doc/_build/html/_static/basic.css
Writing evaluated template result to /builddir/build/BUILD/python-pysb-1.16.0-build/pysb-1.16.0/doc/_build/html/_static/documentation_options.js
Writing evaluated template result to /builddir/build/BUILD/python-pysb-1.16.0-build/pysb-1.16.0/doc/_build/html/_static/language_data.js
Writing evaluated template result to /builddir/build/BUILD/python-pysb-1.16.0-build/pysb-1.16.0/doc/_build/html/_static/classic.css
Writing evaluated template result to /builddir/build/BUILD/python-pysb-1.16.0-build/pysb-1.16.0/doc/_build/html/_static/sidebar.js
copying static files: done
copying extra files... 
copying extra files: done
copying assets: done
writing output... [  3%] faq
writing output... [  6%] index
writing output... [ 10%] installation
writing output... [ 13%] modules/bng
writing output... [ 16%] modules/core
writing output... [ 19%] modules/export/bng_net
writing output... [ 23%] modules/export/bngl
writing output... [ 26%] modules/export/index
writing output... [ 29%] modules/export/json
writing output... [ 32%] modules/export/kappa
writing output... [ 35%] modules/export/mathematica
writing output... [ 39%] modules/export/matlab
writing output... [ 42%] modules/export/potterswheel
writing output... [ 45%] modules/export/pysb_flat
writing output... [ 48%] modules/export/sbml
writing output... [ 52%] modules/export/stochkit
writing output... [ 55%] modules/importers/index
writing output... [ 58%] modules/index
writing output... [ 61%] modules/integrate
writing output... [ 65%] modules/kappa
writing output... [ 68%] modules/macros
writing output... [ 71%] modules/modeltests
writing output... [ 74%] modules/pathfinder
writing output... [ 77%] modules/pattern
writing output... [ 81%] modules/simulator
writing output... [ 84%] modules/tools/render
writing output... [ 87%] modules/tools/render_reactions
writing output... [ 90%] modules/tools/render_species
writing output... [ 94%] modules/tools/sensitivity_analysis
writing output... [ 97%] tutorial
writing output... [100%] useful_references
generating indices... genindex py-modindex done
highlighting module code... [  3%] pysb.bng
highlighting module code... [  6%] pysb.core
highlighting module code... [  9%] pysb.export
highlighting module code... [ 12%] pysb.export.bng_net
highlighting module code... [ 16%] pysb.export.bngl
highlighting module code... [ 19%] pysb.export.json
highlighting module code... [ 22%] pysb.export.kappa
highlighting module code... [ 25%] pysb.export.mathematica
highlighting module code... [ 28%] pysb.export.matlab
highlighting module code... [ 31%] pysb.export.potterswheel
highlighting module code... [ 34%] pysb.export.pysb_flat
highlighting module code... [ 38%] pysb.export.sbml
highlighting module code... [ 41%] pysb.export.stochkit
highlighting module code... [ 44%] pysb.importers.bngl
highlighting module code... [ 47%] pysb.importers.sbml
highlighting module code... [ 50%] pysb.integrate
highlighting module code... [ 53%] pysb.kappa
highlighting module code... [ 56%] pysb.macros
highlighting module code... [ 59%] pysb.pathfinder
highlighting module code... [ 62%] pysb.pattern
highlighting module code... [ 66%] pysb.simulator.base
highlighting module code... [ 69%] pysb.simulator.bng
highlighting module code... [ 72%] pysb.simulator.cuda_ssa
highlighting module code... [ 75%] pysb.simulator.cupsoda
highlighting module code... [ 78%] pysb.simulator.kappa
highlighting module code... [ 81%] pysb.simulator.opencl_ssa
highlighting module code... [ 84%] pysb.simulator.scipyode
highlighting module code... [ 88%] pysb.simulator.stochkit
highlighting module code... [ 91%] pysb.testing.modeltests
highlighting module code... [ 94%] pysb.tools.render_reactions
highlighting module code... [ 97%] pysb.tools.render_species
highlighting module code... [100%] pysb.tools.sensitivity_analysis
writing additional pages... search done
copying images... [ 50%] modules/tools/robertson_reactions.png
copying images... [100%] examples/fig_mymodel4.png
dumping search index in English (code: en)... done
dumping object inventory... done
build succeeded, 1 warning.
The HTML pages are in _build/html.
Build finished. The HTML pages are in _build/html.
make: Leaving directory '/builddir/build/BUILD/python-pysb-1.16.0-build/pysb-1.16.0/doc'
+ rm doc/_build/html/.buildinfo
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.92IBVo
+ umask 022
+ cd /builddir/build/BUILD/python-pysb-1.16.0-build
+ '[' /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT '!=' / ']'
+ rm -rf /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT
++ dirname /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT
+ mkdir -p /builddir/build/BUILD/python-pysb-1.16.0-build
+ mkdir /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CFLAGS
+ CXXFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ export CXXFLAGS
+ FFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules  '
+ export FFLAGS
+ FCFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib/gfortran/modules  '
+ export FCFLAGS
+ VALAFLAGS=-g
+ export VALAFLAGS
+ RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes --cap-lints=warn'
+ export RUSTFLAGS
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1   '
+ export LDFLAGS
+ LT_SYS_LIBRARY_PATH=/usr/lib:
+ export LT_SYS_LIBRARY_PATH
+ CC=gcc
+ export CC
+ CXX=g++
+ export CXX
+ cd pysb-1.16.0
+ CFLAGS='-O2 -flto=auto -ffat-lto-objects -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer  '
+ LDFLAGS='-Wl,-z,relro -Wl,--as-needed   -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1  -Wl,--build-id=sha1   '
+ /usr/bin/python3 setup.py install -O1 --skip-build --root /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT --prefix /usr
/builddir/build/BUILD/python-pysb-1.16.0-build/pysb-1.16.0/ez_setup.py:151: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81.
  import pkg_resources
/usr/lib/python3.15/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require'
  warnings.warn(msg)
/usr/lib/python3.15/site-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
!!
        ********************************************************************************
        Please consider removing the following classifiers in favor of a SPDX license expression:
        License :: OSI Approved :: BSD License
        See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
        ********************************************************************************
!!
  self._finalize_license_expression()
running install
/usr/lib/python3.15/site-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!
        ********************************************************************************
        Please avoid running ``setup.py`` directly.
        Instead, use pypa/build, pypa/installer or other
        standards-based tools.
        Follow the current Python packaging guidelines when building
        Python RPM packages.
        This deprecation is overdue, please update your project and remove deprecated
        calls to avoid build errors in the future.
        See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html
        and https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/ for details.
        ********************************************************************************
!!
  self.initialize_options()
running install_lib
creating /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages
creating /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb
copying build/lib/pysb/__init__.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb
copying build/lib/pysb/_version.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb
copying build/lib/pysb/anneal_mod.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb
copying build/lib/pysb/annotation.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb
copying build/lib/pysb/bng.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb
copying build/lib/pysb/builder.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb
copying build/lib/pysb/core.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb
copying build/lib/pysb/integrate.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb
copying build/lib/pysb/jacobian.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb
copying build/lib/pysb/kappa.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb
copying build/lib/pysb/logging.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb
copying build/lib/pysb/macros.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb
copying build/lib/pysb/pathfinder.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb
copying build/lib/pysb/pattern.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb
copying build/lib/pysb/util.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb
creating /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/generator
copying build/lib/pysb/generator/__init__.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/generator
copying build/lib/pysb/generator/bng.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/generator
copying build/lib/pysb/generator/kappa.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/generator
creating /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/importers
copying build/lib/pysb/importers/__init__.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/importers
copying build/lib/pysb/importers/bngl.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/importers
copying build/lib/pysb/importers/json.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/importers
copying build/lib/pysb/importers/sbml.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/importers
creating /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tools
copying build/lib/pysb/tools/__init__.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tools
copying build/lib/pysb/tools/render_reactions.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tools
copying build/lib/pysb/tools/render_species.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tools
copying build/lib/pysb/tools/sensitivity_analysis.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tools
copying build/lib/pysb/tools/species_graph.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tools
creating /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples
copying build/lib/pysb/examples/__init__.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples
copying build/lib/pysb/examples/bax_pore.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples
copying build/lib/pysb/examples/bax_pore_sequential.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples
copying build/lib/pysb/examples/bngwiki_egfr_simple.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples
copying build/lib/pysb/examples/bngwiki_enzymatic_cycle_mm.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples
copying build/lib/pysb/examples/bngwiki_simple.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples
copying build/lib/pysb/examples/earm_1_0.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples
copying build/lib/pysb/examples/earm_1_3.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples
copying build/lib/pysb/examples/explicit.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples
copying build/lib/pysb/examples/expression_observables.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples
copying build/lib/pysb/examples/fixed_initial.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples
copying build/lib/pysb/examples/fricker_2010_apoptosis.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples
copying build/lib/pysb/examples/hello_pysb.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples
copying build/lib/pysb/examples/kinase_cascade.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples
copying build/lib/pysb/examples/localfunc.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples
copying build/lib/pysb/examples/michment.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples
copying build/lib/pysb/examples/move_connected.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples
copying build/lib/pysb/examples/robertson.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples
copying build/lib/pysb/examples/run_bax_pore.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples
copying build/lib/pysb/examples/run_bax_pore_sequential.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples
copying build/lib/pysb/examples/run_bng_ssa_example.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples
copying build/lib/pysb/examples/run_earm_1_0.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples
copying build/lib/pysb/examples/run_earm_hpp.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples
copying build/lib/pysb/examples/run_earm_stochkit.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples
copying build/lib/pysb/examples/run_fixed_initial.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples
copying build/lib/pysb/examples/run_kinase_cascade.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples
copying build/lib/pysb/examples/run_michment.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples
copying build/lib/pysb/examples/run_robertson.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples
copying build/lib/pysb/examples/run_tutorial_a.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples
copying build/lib/pysb/examples/run_tyson_oscillator.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples
copying build/lib/pysb/examples/run_tyson_oscillator_stochkit.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples
copying build/lib/pysb/examples/schloegl.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples
copying build/lib/pysb/examples/synth_deg.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples
copying build/lib/pysb/examples/tutorial_a.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples
copying build/lib/pysb/examples/tutorial_b.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples
copying build/lib/pysb/examples/tutorial_c.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples
copying build/lib/pysb/examples/tyson_oscillator.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples
creating /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/export
copying build/lib/pysb/export/__init__.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/export
copying build/lib/pysb/export/__main__.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/export
copying build/lib/pysb/export/bng_net.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/export
copying build/lib/pysb/export/bngl.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/export
copying build/lib/pysb/export/json.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/export
copying build/lib/pysb/export/kappa.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/export
copying build/lib/pysb/export/mathematica.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/export
copying build/lib/pysb/export/matlab.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/export
copying build/lib/pysb/export/potterswheel.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/export
copying build/lib/pysb/export/pysb_flat.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/export
copying build/lib/pysb/export/sbml.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/export
copying build/lib/pysb/export/stochkit.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/export
creating /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/simulator
copying build/lib/pysb/simulator/__init__.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/simulator
copying build/lib/pysb/simulator/base.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/simulator
copying build/lib/pysb/simulator/bng.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/simulator
copying build/lib/pysb/simulator/cuda_ssa.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/simulator
copying build/lib/pysb/simulator/cupsoda.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/simulator
copying build/lib/pysb/simulator/kappa.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/simulator
copying build/lib/pysb/simulator/opencl_ssa.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/simulator
copying build/lib/pysb/simulator/scipyode.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/simulator
copying build/lib/pysb/simulator/ssa_base.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/simulator
copying build/lib/pysb/simulator/stochkit.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/simulator
creating /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/simulator/templates
copying build/lib/pysb/simulator/templates/__init__.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/simulator/templates
copying build/lib/pysb/simulator/templates/cuda_ssa.cu -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/simulator/templates
copying build/lib/pysb/simulator/templates/opencl_ssa.cl -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/simulator/templates
copying build/lib/pysb/simulator/tyche_i.h -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/simulator
creating /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/testing
copying build/lib/pysb/testing/__init__.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/testing
copying build/lib/pysb/testing/modeltests.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/testing
creating /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests
copying build/lib/pysb/tests/__init__.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests
copying build/lib/pysb/tests/jacobian_runtimes.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests
copying build/lib/pysb/tests/test_bng.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests
copying build/lib/pysb/tests/test_core.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests
copying build/lib/pysb/tests/test_examples.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests
copying build/lib/pysb/tests/test_exporters.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests
copying build/lib/pysb/tests/test_expressions.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests
copying build/lib/pysb/tests/test_importers.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests
copying build/lib/pysb/tests/test_integrate.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests
copying build/lib/pysb/tests/test_kappa.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests
copying build/lib/pysb/tests/test_macros.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests
copying build/lib/pysb/tests/test_pathfinder.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests
copying build/lib/pysb/tests/test_pattern.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests
copying build/lib/pysb/tests/test_sensitivity_analysis.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests
copying build/lib/pysb/tests/test_simulationresult.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests
copying build/lib/pysb/tests/test_simulator_bng.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests
copying build/lib/pysb/tests/test_simulator_cuda_opencl_ssa.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests
copying build/lib/pysb/tests/test_simulator_cupsoda.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests
copying build/lib/pysb/tests/test_simulator_kappa.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests
copying build/lib/pysb/tests/test_simulator_scipy.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests
copying build/lib/pysb/tests/test_simulator_stochkit.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests
copying build/lib/pysb/tests/test_util.py -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/__init__.py to __init__.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/_version.py to _version.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/anneal_mod.py to anneal_mod.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/annotation.py to annotation.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/bng.py to bng.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/builder.py to builder.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/core.py to core.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/integrate.py to integrate.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/jacobian.py to jacobian.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/kappa.py to kappa.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/logging.py to logging.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/macros.py to macros.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/pathfinder.py to pathfinder.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/pattern.py to pattern.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/util.py to util.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/generator/__init__.py to __init__.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/generator/bng.py to bng.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/generator/kappa.py to kappa.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/importers/__init__.py to __init__.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/importers/bngl.py to bngl.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/importers/json.py to json.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/importers/sbml.py to sbml.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tools/__init__.py to __init__.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tools/render_reactions.py to render_reactions.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tools/render_species.py to render_species.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tools/sensitivity_analysis.py to sensitivity_analysis.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tools/species_graph.py to species_graph.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples/__init__.py to __init__.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples/bax_pore.py to bax_pore.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples/bax_pore_sequential.py to bax_pore_sequential.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples/bngwiki_egfr_simple.py to bngwiki_egfr_simple.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples/bngwiki_enzymatic_cycle_mm.py to bngwiki_enzymatic_cycle_mm.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples/bngwiki_simple.py to bngwiki_simple.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples/earm_1_0.py to earm_1_0.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples/earm_1_3.py to earm_1_3.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples/explicit.py to explicit.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples/expression_observables.py to expression_observables.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples/fixed_initial.py to fixed_initial.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples/fricker_2010_apoptosis.py to fricker_2010_apoptosis.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples/hello_pysb.py to hello_pysb.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples/kinase_cascade.py to kinase_cascade.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples/localfunc.py to localfunc.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples/michment.py to michment.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples/move_connected.py to move_connected.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples/robertson.py to robertson.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples/run_bax_pore.py to run_bax_pore.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples/run_bax_pore_sequential.py to run_bax_pore_sequential.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples/run_bng_ssa_example.py to run_bng_ssa_example.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples/run_earm_1_0.py to run_earm_1_0.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples/run_earm_hpp.py to run_earm_hpp.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples/run_earm_stochkit.py to run_earm_stochkit.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples/run_fixed_initial.py to run_fixed_initial.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples/run_kinase_cascade.py to run_kinase_cascade.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples/run_michment.py to run_michment.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples/run_robertson.py to run_robertson.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples/run_tutorial_a.py to run_tutorial_a.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples/run_tyson_oscillator.py to run_tyson_oscillator.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples/run_tyson_oscillator_stochkit.py to run_tyson_oscillator_stochkit.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples/schloegl.py to schloegl.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples/synth_deg.py to synth_deg.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples/tutorial_a.py to tutorial_a.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples/tutorial_b.py to tutorial_b.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples/tutorial_c.py to tutorial_c.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/examples/tyson_oscillator.py to tyson_oscillator.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/export/__init__.py to __init__.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/export/__main__.py to __main__.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/export/bng_net.py to bng_net.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/export/bngl.py to bngl.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/export/json.py to json.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/export/kappa.py to kappa.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/export/mathematica.py to mathematica.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/export/matlab.py to matlab.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/export/potterswheel.py to potterswheel.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/export/pysb_flat.py to pysb_flat.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/export/sbml.py to sbml.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/export/stochkit.py to stochkit.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/simulator/__init__.py to __init__.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/simulator/base.py to base.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/simulator/bng.py to bng.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/simulator/cuda_ssa.py to cuda_ssa.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/simulator/cupsoda.py to cupsoda.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/simulator/kappa.py to kappa.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/simulator/opencl_ssa.py to opencl_ssa.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/simulator/scipyode.py to scipyode.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/simulator/ssa_base.py to ssa_base.cpython-315.pyc
/usr/lib/python3.15/site-packages/pysb/simulator/ssa_base.py:35: SyntaxWarning: "\s" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\s"? A raw string is also an option.
/usr/lib/python3.15/site-packages/pysb/simulator/ssa_base.py:71: SyntaxWarning: "\d" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\d"? A raw string is also an option.
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/simulator/stochkit.py to stochkit.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/simulator/templates/__init__.py to __init__.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/testing/__init__.py to __init__.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/testing/modeltests.py to modeltests.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/__init__.py to __init__.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/jacobian_runtimes.py to jacobian_runtimes.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/test_bng.py to test_bng.cpython-315.pyc
/usr/lib/python3.15/site-packages/pysb/tests/test_bng.py:254: SyntaxWarning: "\(" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\("? A raw string is also an option.
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/test_core.py to test_core.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/test_examples.py to test_examples.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/test_exporters.py to test_exporters.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/test_expressions.py to test_expressions.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/test_importers.py to test_importers.cpython-315.pyc
/usr/lib/python3.15/site-packages/pysb/tests/test_importers.py:191: SyntaxWarning: "\w" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\w"? A raw string is also an option.
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/test_integrate.py to test_integrate.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/test_kappa.py to test_kappa.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/test_macros.py to test_macros.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/test_pathfinder.py to test_pathfinder.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/test_pattern.py to test_pattern.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/test_sensitivity_analysis.py to test_sensitivity_analysis.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/test_simulationresult.py to test_simulationresult.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/test_simulator_bng.py to test_simulator_bng.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/test_simulator_cuda_opencl_ssa.py to test_simulator_cuda_opencl_ssa.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/test_simulator_cupsoda.py to test_simulator_cupsoda.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/test_simulator_kappa.py to test_simulator_kappa.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/test_simulator_scipy.py to test_simulator_scipy.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/test_simulator_stochkit.py to test_simulator_stochkit.cpython-315.pyc
byte-compiling /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/test_util.py to test_util.cpython-315.pyc
writing byte-compilation script '/tmp/tmpn9hrktbv.py'
/usr/bin/python3 /tmp/tmpn9hrktbv.py
/usr/lib/python3.15/site-packages/pysb/simulator/ssa_base.py:35: SyntaxWarning: "\s" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\s"? A raw string is also an option.
/usr/lib/python3.15/site-packages/pysb/simulator/ssa_base.py:71: SyntaxWarning: "\d" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\d"? A raw string is also an option.
/usr/lib/python3.15/site-packages/pysb/tests/test_bng.py:254: SyntaxWarning: "\(" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\("? A raw string is also an option.
/usr/lib/python3.15/site-packages/pysb/tests/test_importers.py:191: SyntaxWarning: "\w" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\w"? A raw string is also an option.
removing /tmp/tmpn9hrktbv.py
running install_egg_info
running egg_info
writing pysb.egg-info/PKG-INFO
writing dependency_links to pysb.egg-info/dependency_links.txt
writing requirements to pysb.egg-info/requires.txt
writing top-level names to pysb.egg-info/top_level.txt
reading manifest file 'pysb.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE.txt'
writing manifest file 'pysb.egg-info/SOURCES.txt'
Copying pysb.egg-info to /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb-1.16.0-py3.15.egg-info
running install_scripts
creating /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/bin
copying build/scripts-3.15/pysb_export -> /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/bin
changing mode of /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/bin/pysb_export to 755
+ rm -rfv /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/bin/__pycache__
+ chmod +x /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT//usr/lib/python3.15/site-packages/pysb/examples/run_bax_pore.py /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT//usr/lib/python3.15/site-packages/pysb/examples/run_bax_pore_sequential.py /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT//usr/lib/python3.15/site-packages/pysb/examples/run_bng_ssa_example.py /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT//usr/lib/python3.15/site-packages/pysb/examples/run_earm_1_0.py /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT//usr/lib/python3.15/site-packages/pysb/examples/run_earm_hpp.py /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT//usr/lib/python3.15/site-packages/pysb/examples/run_earm_stochkit.py /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT//usr/lib/python3.15/site-packages/pysb/examples/run_fixed_initial.py /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT//usr/lib/python3.15/site-packages/pysb/examples/run_kinase_cascade.py /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT//usr/lib/python3.15/site-packages/pysb/examples/run_michment.py /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT//usr/lib/python3.15/site-packages/pysb/examples/run_robertson.py /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT//usr/lib/python3.15/site-packages/pysb/examples/run_tutorial_a.py /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT//usr/lib/python3.15/site-packages/pysb/examples/run_tyson_oscillator.py /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT//usr/lib/python3.15/site-packages/pysb/examples/run_tyson_oscillator_stochkit.py
+ chmod +x /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT//usr/lib/python3.15/site-packages/pysb/tools/render_reactions.py /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT//usr/lib/python3.15/site-packages/pysb/tools/render_species.py /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT//usr/lib/python3.15/site-packages/pysb/tools/sensitivity_analysis.py /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT//usr/lib/python3.15/site-packages/pysb/tools/species_graph.py
+ /usr/lib/rpm/check-buildroot
+ /usr/lib/rpm/redhat/brp-ldconfig
+ COMPRESS='gzip -9 -n'
+ COMPRESS_EXT=.gz
+ /usr/lib/rpm/brp-compress
+ /usr/lib/rpm/brp-strip /usr/bin/strip
+ /usr/lib/rpm/brp-strip-comment-note /usr/bin/strip /usr/bin/objdump
+ /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip
+ /usr/lib/rpm/check-rpaths
+ /usr/lib/rpm/redhat/brp-mangle-shebangs
*** WARNING: ./usr/lib/python3.15/site-packages/pysb/tools/sensitivity_analysis.py is executable but has no shebang, removing executable bit
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+ /usr/lib/rpm/brp-remove-la-files
+ /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo
+ env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j8
Bytecompiling .py files below /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15 using python3.15
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/usr/lib/python3.15/site-packages/pysb/tests/test_importers.py:191: SyntaxWarning: "\w" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\w"? A raw string is also an option.
/usr/lib/python3.15/site-packages/pysb/simulator/ssa_base.py:35: SyntaxWarning: "\s" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\s"? A raw string is also an option.
/usr/lib/python3.15/site-packages/pysb/simulator/ssa_base.py:71: SyntaxWarning: "\d" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\d"? A raw string is also an option.
/usr/lib/python3.15/site-packages/pysb/tests/test_importers.py:191: SyntaxWarning: "\w" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\w"? A raw string is also an option.
/usr/lib/python3.15/site-packages/pysb/simulator/ssa_base.py:35: SyntaxWarning: "\s" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\s"? A raw string is also an option.
/usr/lib/python3.15/site-packages/pysb/simulator/ssa_base.py:71: SyntaxWarning: "\d" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\d"? A raw string is also an option.
/usr/lib/python3.15/site-packages/pysb/tests/test_bng.py:254: SyntaxWarning: "\(" is an invalid escape sequence. Such sequences will not work in the future. Did you mean "\\("? A raw string is also an option.
+ /usr/lib/rpm/redhat/brp-python-hardlink
+ /usr/bin/add-det --brp -j8 /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT
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/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/__pycache__/test_core.cpython-315.pyc: replacing with normalized version
/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/__pycache__/test_pattern.cpython-315.pyc: replacing with normalized version
/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/__pycache__/test_pattern.cpython-315.opt-1.pyc: replacing with normalized version
/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/__pycache__/test_kappa.cpython-315.pyc: replacing with normalized version
/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/__pycache__/test_simulationresult.cpython-315.pyc: replacing with normalized version
/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/__pycache__/test_simulator_kappa.cpython-315.pyc: replacing with normalized version
/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/__pycache__/test_simulator_stochkit.cpython-315.pyc: replacing with normalized version
/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/__pycache__/test_sensitivity_analysis.cpython-315.pyc: replacing with normalized version
/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/__pycache__/test_simulator_cupsoda.cpython-315.pyc: replacing with normalized version
/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/__pycache__/test_simulator_bng.cpython-315.pyc: replacing with normalized version
/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/__pycache__/test_util.cpython-315.pyc: replacing with normalized version
/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/__pycache__/test_examples.cpython-315.opt-1.pyc: replacing with normalized version
/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/__pycache__/test_exporters.cpython-315.opt-1.pyc: replacing with normalized version
/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/__pycache__/test_simulator_cuda_opencl_ssa.cpython-315.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/__pycache__/test_integrate.cpython-315.opt-1.pyc: replacing with normalized version
/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/__pycache__/test_simulator_kappa.cpython-315.opt-1.pyc: replacing with normalized version
/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/__pycache__/test_bng.cpython-315.opt-1.pyc: replacing with normalized version
/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/__pycache__/test_simulator_scipy.cpython-315.opt-1.pyc: replacing with normalized version
/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/__pycache__/test_importers.cpython-315.opt-1.pyc: replacing with normalized version
/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/__pycache__/__init__.cpython-315.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/__pycache__/test_util.cpython-315.opt-1.pyc: replacing with normalized version
/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/__pycache__/_version.cpython-315.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/__pycache__/test_kappa.cpython-315.opt-1.pyc: replacing with normalized version
/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/__pycache__/annotation.cpython-315.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/__pycache__/test_simulator_cupsoda.cpython-315.opt-1.pyc: replacing with normalized version
/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/__pycache__/test_simulator_bng.cpython-315.opt-1.pyc: replacing with normalized version
/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/__pycache__/test_core.cpython-315.opt-1.pyc: replacing with normalized version
/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/tests/__pycache__/test_simulator_scipy.cpython-315.pyc: replacing with normalized version
/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/__pycache__/integrate.cpython-315.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/__pycache__/builder.cpython-315.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/__pycache__/anneal_mod.cpython-315.pyc: replacing with normalized version
/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/__pycache__/kappa.cpython-315.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/__pycache__/logging.cpython-315.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/__pycache__/jacobian.cpython-315.pyc: replacing with normalized version
/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/__pycache__/pathfinder.cpython-315.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/__pycache__/util.cpython-315.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/__pycache__/anneal_mod.cpython-315.opt-1.pyc: replacing with normalized version
/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/__pycache__/jacobian.cpython-315.opt-1.pyc: replacing with normalized version
/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/__pycache__/bng.cpython-315.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/__pycache__/macros.cpython-315.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/__pycache__/pattern.cpython-315.pyc: rewriting with normalized contents
/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/__pycache__/core.cpython-315.pyc: replacing with normalized version
/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/lib/python3.15/site-packages/pysb/__pycache__/core.cpython-315.opt-1.pyc: replacing with normalized version
Scanned 27 directories and 342 files,
    processed 134 inodes,
    134 modified (46 replaced + 88 rewritten),
    0 unsupported format, 0 errors
+ /usr/bin/linkdupes --brp /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr
Scanned 26 directories and 342 files,
    considered 342 files, read 7 files, linked 3 files, 0 errors
    sum of sizes of linked files: 0 bytes
Processing files: python3-pysb-1.16.0-19.fc45.noarch
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.SjcgWQ
+ umask 022
+ cd /builddir/build/BUILD/python-pysb-1.16.0-build
+ cd pysb-1.16.0
+ DOCDIR=/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/share/doc/python-pysb
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/share/doc/python-pysb
+ cp -pr /builddir/build/BUILD/python-pysb-1.16.0-build/pysb-1.16.0/README.rst /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/share/doc/python-pysb
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.L79cH7
+ umask 022
+ cd /builddir/build/BUILD/python-pysb-1.16.0-build
+ cd pysb-1.16.0
+ LICENSEDIR=/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/share/licenses/python-pysb
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/share/licenses/python-pysb
+ cp -pr /builddir/build/BUILD/python-pysb-1.16.0-build/pysb-1.16.0/LICENSE.txt /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/share/licenses/python-pysb
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: python-pysb = 1.16.0-19.fc45 python3-pysb = 1.16.0-19.fc45 python3.15-pysb = 1.16.0-19.fc45 python3.15dist(pysb) = 1.16 python3dist(pysb) = 1.16
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Requires: /usr/bin/python3 python(abi) = 3.15 python3.15dist(networkx) python3.15dist(numpy) python3.15dist(scipy) >= 1.1 python3.15dist(sympy) >= 1.6
Obsoletes: python-pysb < 1.16.0-19.fc45
Processing files: python-pysb-doc-1.16.0-19.fc45.noarch
Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.yXQq7z
+ umask 022
+ cd /builddir/build/BUILD/python-pysb-1.16.0-build
+ cd pysb-1.16.0
+ DOCDIR=/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/share/doc/python-pysb
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export DOCDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/share/doc/python-pysb
+ cp -pr /builddir/build/BUILD/python-pysb-1.16.0-build/pysb-1.16.0/doc/_build/html /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/share/doc/python-pysb
+ RPM_EC=0
++ jobs -p
+ exit 0
Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.v6Xu40
+ umask 022
+ cd /builddir/build/BUILD/python-pysb-1.16.0-build
+ cd pysb-1.16.0
+ LICENSEDIR=/builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/share/licenses/python-pysb
+ export LC_ALL=C.UTF-8
+ LC_ALL=C.UTF-8
+ export LICENSEDIR
+ /usr/bin/mkdir -p /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/share/licenses/python-pysb
+ cp -pr /builddir/build/BUILD/python-pysb-1.16.0-build/pysb-1.16.0/LICENSE.txt /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT/usr/share/licenses/python-pysb
+ RPM_EC=0
++ jobs -p
+ exit 0
Provides: bundled(jquery) python-pysb-doc = 1.16.0-19.fc45
Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1
Obsoletes: python-pysb-docs <= 1.0.1
Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/python-pysb-1.16.0-build/BUILDROOT
Wrote: /builddir/build/RPMS/python3-pysb-1.16.0-19.fc45.noarch.rpm
Wrote: /builddir/build/RPMS/python-pysb-doc-1.16.0-19.fc45.noarch.rpm
RPM build warnings:
    The %py3_build macro is deprecated and will likely stop working in Fedora 45. See the current Python packaging guidelines: https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/
    The %py3_install macro is deprecated and will likely stop working in Fedora 45. See the current Python packaging guidelines: https://docs.fedoraproject.org/en-US/packaging-guidelines/Python/
Child return code was: 0