Mock Version: 6.5 Mock Version: 6.5 Mock Version: 6.5 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target riscv64 --nodeps /builddir/build/SPECS/python-pysam.spec'], chrootPath='/var/lib/mock/f45-build-32437-659/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=864000uid=995gid=135user='mockbuild'unshare_net=TrueprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.8xsuyyg3:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.8xsuyyg3:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'fb8c15cf14824c539e4d005ca9f2c420', '-D', '/var/lib/mock/f45-build-32437-659/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.8xsuyyg3:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -bs --noclean --target riscv64 --nodeps /builddir/build/SPECS/python-pysam.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1784678400 Wrote: /builddir/build/SRPMS/python-pysam-0.24.0-4.fc45.src.rpm Child return code was: 0 ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target riscv64 --nodeps /builddir/build/SPECS/python-pysam.spec'], chrootPath='/var/lib/mock/f45-build-32437-659/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=864000uid=995gid=135user='mockbuild'unshare_net=TrueraiseExc=FalseprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.8xsuyyg3:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.8xsuyyg3:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '5485b72df4944eaf9c5e719a7093b0e1', '-D', '/var/lib/mock/f45-build-32437-659/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.8xsuyyg3:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --noclean --target riscv64 --nodeps /builddir/build/SPECS/python-pysam.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1784678400 Executing(mkbuilddir): /bin/sh -e /var/tmp/rpm-tmp.tHPiPu Creating(rpmbuild.env): /builddir/build/BUILD/python-pysam-0.24.0-build/rpmbuild.env RPM_SOURCE_DIR="/builddir/build/SOURCES" RPM_BUILD_DIR="/builddir/build/BUILD/python-pysam-0.24.0-build" RPM_OPT_FLAGS="-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wno-complain-wrong-lang -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer" RPM_LD_FLAGS="-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes " RPM_ARCH="riscv64" RPM_OS="linux" RPM_BUILD_NCPUS="8" RPM_SPECPARTS_DIR="/builddir/build/BUILD/python-pysam-0.24.0-build/SPECPARTS" export RPM_SOURCE_DIR RPM_BUILD_DIR RPM_OPT_FLAGS RPM_ARCH RPM_OS RPM_BUILD_NCPUS RPM_SPECPARTS_DIR RPM_LD_FLAGS RPM_DOC_DIR="/usr/share/doc" export RPM_DOC_DIR RPM_PACKAGE_NAME="python-pysam" RPM_PACKAGE_VERSION="0.24.0" RPM_PACKAGE_RELEASE="4.fc45" export RPM_PACKAGE_NAME RPM_PACKAGE_VERSION RPM_PACKAGE_RELEASE LANG=C.UTF-8 export LANG unset CDPATH DISPLAY ||: unset DEBUGINFOD_URLS ||: unset RPM_CONFIG_DIR ||: RPM_BUILD_ROOT="/builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT" export RPM_BUILD_ROOT PKG_CONFIG_PATH="${PKG_CONFIG_PATH}:/usr/lib64/pkgconfig:/usr/share/pkgconfig" export PKG_CONFIG_PATH CONFIG_SITE=${CONFIG_SITE:-NONE} export CONFIG_SITE Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.2ulZqc + umask 022 + cd /builddir/build/BUILD/python-pysam-0.24.0-build + cd /builddir/build/BUILD/python-pysam-0.24.0-build + rm -rf pysam-0.24.0 + /usr/bin/rpmuncompress -x /builddir/build/SOURCES/pysam-0.24.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd pysam-0.24.0 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . ++ grep -rl '/\* Generated by Cython' + rm pysam/libcalignedsegment.c pysam/libcalignmentfile.c pysam/libcbcf.c pysam/libcbcftools.c pysam/libcbgzf.c pysam/libcfaidx.c pysam/libchtslib.c pysam/libcsamfile.c pysam/libcsamtools.c pysam/libctabix.c pysam/libctabixproxies.c pysam/libcutils.c pysam/libcvcf.c + RPM_EC=0 ++ jobs -p + exit 0 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.1Hvj4U + umask 022 + cd /builddir/build/BUILD/python-pysam-0.24.0-build + cd pysam-0.24.0 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-pysam-0.24.0-build/.pyproject-builddir + echo -n + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-pysam-0.24.0-build/.pyproject-builddir + RPM_TOXENV=py315 + FEDORA=45 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-pysam-0.24.0-build/pyproject-wheeldir --output /builddir/build/BUILD/python-pysam-0.24.0-build/python-pysam-0.24.0-4.fc45.riscv64-pyproject-buildrequires --dep-overrides-file /builddir/build/BUILD/python-pysam-0.24.0-build/python-pysam-0.24.0-4.fc45.riscv64-pyproject-dep-overrides Handling setuptools>=59.0 from build-system.requires Requirement not satisfied: setuptools>=59.0 Handling Cython>=3,<4 from build-system.requires Requirement satisfied: Cython<4,>=3 (installed: Cython 3.2.8) Exiting dependency generation pass: build backend + cat /builddir/build/BUILD/python-pysam-0.24.0-build/python-pysam-0.24.0-4.fc45.riscv64-pyproject-buildrequires + rm -rfv '*.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-pysam-0.24.0-4.fc45.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -br --noprep --noclean --target riscv64 --nodeps /builddir/build/SPECS/python-pysam.spec'], chrootPath='/var/lib/mock/f45-build-32437-659/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=864000uid=995gid=135user='mockbuild'unshare_net=TrueraiseExc=FalseprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.8xsuyyg3:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.8xsuyyg3:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', 'b6b5ec14cb484e4bbcd576e311a23afd', '-D', '/var/lib/mock/f45-build-32437-659/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.8xsuyyg3:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -br --noprep --noclean --target riscv64 --nodeps /builddir/build/SPECS/python-pysam.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1784678400 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.5zM7wP + umask 022 + cd /builddir/build/BUILD/python-pysam-0.24.0-build + cd pysam-0.24.0 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-pysam-0.24.0-build/.pyproject-builddir + echo -n + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-pysam-0.24.0-build/.pyproject-builddir + RPM_TOXENV=py315 + FEDORA=45 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-pysam-0.24.0-build/pyproject-wheeldir --output /builddir/build/BUILD/python-pysam-0.24.0-build/python-pysam-0.24.0-4.fc45.riscv64-pyproject-buildrequires --dep-overrides-file /builddir/build/BUILD/python-pysam-0.24.0-build/python-pysam-0.24.0-4.fc45.riscv64-pyproject-dep-overrides Handling setuptools>=59.0 from build-system.requires Requirement satisfied: setuptools>=59.0 (installed: setuptools 83.0.0) Handling Cython>=3,<4 from build-system.requires Requirement satisfied: Cython<4,>=3 (installed: Cython 3.2.8) # pysam: Cython 3.2.8 is available - using cythonize if necessary # pysam: htslib mode is shared # pysam: HTSLIB_CONFIGURE_OPTIONS=None # pysam: (env) CC=gcc # pysam: (env) CFLAGS=-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC # pysam: (env) LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for ranlib... ranlib checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall checking for gcc options needed to detect all undeclared functions... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/param.h... yes checking whether _XOPEN_SOURCE is declared... no checking whether __get_cpuid_max is declared... no checking whether __cpuid_count is declared... no checking for x86intrin.h... no checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for gcc option to enable large file support... none needed checking shared library type for unknown-Linux... plain .so checking whether the linker supports versioned symbols... no checking whether the compiler accepts -fvisibility=hidden... yes checking build system type... riscv64-unknown-linux-gnu checking host system type... riscv64-unknown-linux-gnu checking for getpagesize... yes checking for working mmap... yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking for getauxval... yes checking for elf_aux_info... no checking for posix_memalign... yes checking whether fdatasync is declared... yes checking for fdatasync... yes checking for __attribute__((constructor))... yes checking for clock_gettime with CLOCK_PROCESS_CPUTIME_ID... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking whether htscodecs files are present... yes checking for libdeflate.h... no checking for libdeflate_deflate_compress in -ldeflate... no checking for curl/curl.h... no checking for curl_easy_pause in -lcurl... no checking for curl_easy_init in -lcurl... no configure: error: libcurl library not found Support for HTTPS and other SSL-based URLs requires routines from the libcurl library . Building HTSlib with libcurl enabled requires libcurl development files to be installed on the build machine; you may need to ensure a package such as libcurl4-{gnutls,nss,openssl}-dev (on Debian or Ubuntu Linux) or libcurl-devel (on RPM-based Linux distributions or Cygwin) is installed. Either configure with --disable-libcurl or resolve this error to build HTSlib. checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for ranlib... ranlib checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall checking for gcc options needed to detect all undeclared functions... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/param.h... yes checking whether _XOPEN_SOURCE is declared... no checking whether __get_cpuid_max is declared... no checking whether __cpuid_count is declared... no checking for x86intrin.h... no checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for gcc option to enable large file support... none needed checking shared library type for unknown-Linux... plain .so checking whether the linker supports versioned symbols... no checking whether the compiler accepts -fvisibility=hidden... yes checking build system type... riscv64-unknown-linux-gnu checking host system type... riscv64-unknown-linux-gnu checking for getpagesize... yes checking for working mmap... yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking for getauxval... yes checking for elf_aux_info... no checking for posix_memalign... yes checking whether fdatasync is declared... yes checking for fdatasync... yes checking for __attribute__((constructor))... yes checking for clock_gettime with CLOCK_PROCESS_CPUTIME_ID... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking whether htscodecs files are present... yes checking for libdeflate.h... no checking for libdeflate_deflate_compress in -ldeflate... no configure: WARNING: GCS support not enabled: requires libcurl support configure: WARNING: S3 support not enabled: requires libcurl support checking for library containing regcomp... none required configure: creating ./config.status config.status: creating config.mk config.status: creating htslib.pc.tmp config.status: creating config.h config.status: linking htscodecs_bundled.mk to htscodecs.mk /usr/lib/python3.15/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2027-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) # pysam: htslib configure options: --disable-libcurl # pysam: htslib_config HTS_CFLAGS_AVX2= # pysam: htslib_config HTS_CFLAGS_AVX512= # pysam: htslib_config HTS_CFLAGS_SSE4= # pysam: htslib_config LIBHTS_OBJS=kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o sam_mods.o simd.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o # pysam: htslib_config LIBS=-llzma -lbz2 -lz -lm # pysam: htslib_config PLATFORM=default # pysam: config_option: ENABLE_GCS=0 # pysam: config_option: ENABLE_PLUGINS=0 # pysam: config_option: ENABLE_S3=0 # pysam: config_option: HAVE_COMMONCRYPTO=0 # pysam: config_option: HAVE_HMAC=0 # pysam: config_option: HAVE_LIBBZ2=1 # pysam: config_option: HAVE_LIBCURL=0 # pysam: config_option: HAVE_LIBDEFLATE=0 # pysam: config_option: HAVE_LIBLZMA=1 # pysam: config_option: HAVE_MMAP=1 running egg_info writing pysam.egg-info/PKG-INFO writing dependency_links to pysam.egg-info/dependency_links.txt writing top-level names to pysam.egg-info/top_level.txt reading manifest file 'pysam.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'KNOWN_BUGS' warning: no files found matching 'THANKS' warning: no files found matching 'pysam/libc*.c' no previously-included directories found matching 'tests' adding license file 'COPYING' adding license file 'AUTHORS' writing manifest file 'pysam.egg-info/SOURCES.txt' # pysam: Cython 3.2.8 is available - using cythonize if necessary # pysam: htslib mode is shared # pysam: HTSLIB_CONFIGURE_OPTIONS=None # pysam: (env) CC=gcc # pysam: (env) CFLAGS=-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC # pysam: (env) LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for ranlib... ranlib checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall checking for gcc options needed to detect all undeclared functions... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/param.h... yes checking whether _XOPEN_SOURCE is declared... no checking whether __get_cpuid_max is declared... no checking whether __cpuid_count is declared... no checking for x86intrin.h... no checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for gcc option to enable large file support... none needed checking shared library type for unknown-Linux... plain .so checking whether the linker supports versioned symbols... no checking whether the compiler accepts -fvisibility=hidden... yes checking build system type... riscv64-unknown-linux-gnu checking host system type... riscv64-unknown-linux-gnu checking for getpagesize... yes checking for working mmap... yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking for getauxval... yes checking for elf_aux_info... no checking for posix_memalign... yes checking whether fdatasync is declared... yes checking for fdatasync... yes checking for __attribute__((constructor))... yes checking for clock_gettime with CLOCK_PROCESS_CPUTIME_ID... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking whether htscodecs files are present... yes checking for libdeflate.h... no checking for libdeflate_deflate_compress in -ldeflate... no checking for curl/curl.h... no checking for curl_easy_pause in -lcurl... no checking for curl_easy_init in -lcurl... no configure: error: libcurl library not found Support for HTTPS and other SSL-based URLs requires routines from the libcurl library . Building HTSlib with libcurl enabled requires libcurl development files to be installed on the build machine; you may need to ensure a package such as libcurl4-{gnutls,nss,openssl}-dev (on Debian or Ubuntu Linux) or libcurl-devel (on RPM-based Linux distributions or Cygwin) is installed. Either configure with --disable-libcurl or resolve this error to build HTSlib. checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for ranlib... ranlib checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall checking for gcc options needed to detect all undeclared functions... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/param.h... yes checking whether _XOPEN_SOURCE is declared... no checking whether __get_cpuid_max is declared... no checking whether __cpuid_count is declared... no checking for x86intrin.h... no checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for gcc option to enable large file support... none needed checking shared library type for unknown-Linux... plain .so checking whether the linker supports versioned symbols... no checking whether the compiler accepts -fvisibility=hidden... yes checking build system type... riscv64-unknown-linux-gnu checking host system type... riscv64-unknown-linux-gnu checking for getpagesize... yes checking for working mmap... yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking for getauxval... yes checking for elf_aux_info... no checking for posix_memalign... yes checking whether fdatasync is declared... yes checking for fdatasync... yes checking for __attribute__((constructor))... yes checking for clock_gettime with CLOCK_PROCESS_CPUTIME_ID... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking whether htscodecs files are present... yes checking for libdeflate.h... no checking for libdeflate_deflate_compress in -ldeflate... no configure: WARNING: GCS support not enabled: requires libcurl support configure: WARNING: S3 support not enabled: requires libcurl support checking for library containing regcomp... none required configure: creating ./config.status config.status: creating config.mk config.status: creating htslib.pc.tmp config.status: creating config.h config.status: config.h is unchanged config.status: linking htscodecs_bundled.mk to htscodecs.mk /usr/lib/python3.15/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2027-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) # pysam: htslib configure options: --disable-libcurl # pysam: htslib_config HTS_CFLAGS_AVX2= # pysam: htslib_config HTS_CFLAGS_AVX512= # pysam: htslib_config HTS_CFLAGS_SSE4= # pysam: htslib_config LIBHTS_OBJS=kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o sam_mods.o simd.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o # pysam: htslib_config LIBS=-llzma -lbz2 -lz -lm # pysam: htslib_config PLATFORM=default # pysam: config_option: ENABLE_GCS=0 # pysam: config_option: ENABLE_PLUGINS=0 # pysam: config_option: ENABLE_S3=0 # pysam: config_option: HAVE_COMMONCRYPTO=0 # pysam: config_option: HAVE_HMAC=0 # pysam: config_option: HAVE_LIBBZ2=1 # pysam: config_option: HAVE_LIBCURL=0 # pysam: config_option: HAVE_LIBDEFLATE=0 # pysam: config_option: HAVE_LIBLZMA=1 # pysam: config_option: HAVE_MMAP=1 running dist_info writing pysam.egg-info/PKG-INFO writing dependency_links to pysam.egg-info/dependency_links.txt writing top-level names to pysam.egg-info/top_level.txt reading manifest file 'pysam.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'KNOWN_BUGS' warning: no files found matching 'THANKS' warning: no files found matching 'pysam/libc*.c' no previously-included directories found matching 'tests' adding license file 'COPYING' adding license file 'AUTHORS' writing manifest file 'pysam.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam-0.24.0.dist-info' + cat /builddir/build/BUILD/python-pysam-0.24.0-build/python-pysam-0.24.0-4.fc45.riscv64-pyproject-buildrequires + rm -rfv pysam-0.24.0.dist-info/ removed 'pysam-0.24.0.dist-info/top_level.txt' removed 'pysam-0.24.0.dist-info/METADATA' removed 'pysam-0.24.0.dist-info/licenses/COPYING' removed 'pysam-0.24.0.dist-info/licenses/AUTHORS' removed directory 'pysam-0.24.0.dist-info/licenses' removed directory 'pysam-0.24.0.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Wrote: /builddir/build/SRPMS/python-pysam-0.24.0-4.fc45.buildreqs.nosrc.rpm Child return code was: 11 Dynamic buildrequires detected Going to install missing buildrequires. See root.log for details. ENTER ['do_with_status'](['bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --noclean --target riscv64 --nodeps /builddir/build/SPECS/python-pysam.spec'], chrootPath='/var/lib/mock/f45-build-32437-659/root'env={'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8'}shell=Falselogger=timeout=864000uid=995gid=135user='mockbuild'unshare_net=TrueprintOutput=Falsenspawn_args=['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.8xsuyyg3:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11']) Using nspawn with args ['--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.8xsuyyg3:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11'] Executing command: ['/usr/bin/systemd-nspawn', '-q', '-M', '46a6b3f12df742e1b991e5bfa39d5664', '-D', '/var/lib/mock/f45-build-32437-659/root', '-a', '-u', 'mockbuild', '--capability=cap_ipc_lock', '--bind=/tmp/mock-resolv.8xsuyyg3:/etc/resolv.conf', '--bind=/dev/btrfs-control', '--bind=/dev/mapper/control', '--bind=/dev/fuse', '--bind=/dev/loop-control', '--bind=/dev/loop0', '--bind=/dev/loop1', '--bind=/dev/loop2', '--bind=/dev/loop3', '--bind=/dev/loop4', '--bind=/dev/loop5', '--bind=/dev/loop6', '--bind=/dev/loop7', '--bind=/dev/loop8', '--bind=/dev/loop9', '--bind=/dev/loop10', '--bind=/dev/loop11', '--console=pipe', '--setenv=TERM=vt100', '--setenv=SHELL=/bin/bash', '--setenv=HOME=/builddir', '--setenv=HOSTNAME=mock', '--setenv=PATH=/usr/bin:/bin:/usr/sbin:/sbin', '--setenv=PROMPT_COMMAND=printf "\\033]0;\\007"', '--setenv=PS1= \\s-\\v\\$ ', '--setenv=LANG=C.UTF-8', '--resolv-conf=off', 'bash', '--login', '-c', '/usr/bin/rpmbuild -ba --noprep --noclean --target riscv64 --nodeps /builddir/build/SPECS/python-pysam.spec'] with env {'TERM': 'vt100', 'SHELL': '/bin/bash', 'HOME': '/builddir', 'HOSTNAME': 'mock', 'PATH': '/usr/bin:/bin:/usr/sbin:/sbin', 'PROMPT_COMMAND': 'printf "\\033]0;\\007"', 'PS1': ' \\s-\\v\\$ ', 'LANG': 'C.UTF-8', 'SYSTEMD_NSPAWN_TMPFS_TMP': '0', 'SYSTEMD_SECCOMP': '0'} and shell False Building target platforms: riscv64 Building for target riscv64 setting SOURCE_DATE_EPOCH=1784678400 Executing(%generate_buildrequires): /bin/sh -e /var/tmp/rpm-tmp.WiN0HH + umask 022 + cd /builddir/build/BUILD/python-pysam-0.24.0-build + cd pysam-0.24.0 + echo pyproject-rpm-macros + echo python3-devel + echo 'python3dist(packaging)' + echo 'python3dist(pip) >= 19' + '[' -f pyproject.toml ']' + echo '(python3dist(tomli) if python3-devel < 3.11)' + rm -rfv '*.dist-info/' + '[' -f /usr/bin/python3 ']' + mkdir -p /builddir/build/BUILD/python-pysam-0.24.0-build/.pyproject-builddir + echo -n + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-pysam-0.24.0-build/.pyproject-builddir + RPM_TOXENV=py315 + FEDORA=45 + HOSTNAME=rpmbuild + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_buildrequires.py --generate-extras --python3_pkgversion 3 --wheeldir /builddir/build/BUILD/python-pysam-0.24.0-build/pyproject-wheeldir --output /builddir/build/BUILD/python-pysam-0.24.0-build/python-pysam-0.24.0-4.fc45.riscv64-pyproject-buildrequires --dep-overrides-file /builddir/build/BUILD/python-pysam-0.24.0-build/python-pysam-0.24.0-4.fc45.riscv64-pyproject-dep-overrides Handling setuptools>=59.0 from build-system.requires Requirement satisfied: setuptools>=59.0 (installed: setuptools 83.0.0) Handling Cython>=3,<4 from build-system.requires Requirement satisfied: Cython<4,>=3 (installed: Cython 3.2.8) # pysam: Cython 3.2.8 is available - using cythonize if necessary # pysam: htslib mode is shared # pysam: HTSLIB_CONFIGURE_OPTIONS=None # pysam: (env) CC=gcc # pysam: (env) CFLAGS=-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC # pysam: (env) LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for ranlib... ranlib checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall checking for gcc options needed to detect all undeclared functions... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/param.h... yes checking whether _XOPEN_SOURCE is declared... no checking whether __get_cpuid_max is declared... no checking whether __cpuid_count is declared... no checking for x86intrin.h... no checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for gcc option to enable large file support... none needed checking shared library type for unknown-Linux... plain .so checking whether the linker supports versioned symbols... no checking whether the compiler accepts -fvisibility=hidden... yes checking build system type... riscv64-unknown-linux-gnu checking host system type... riscv64-unknown-linux-gnu checking for getpagesize... yes checking for working mmap... yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking for getauxval... yes checking for elf_aux_info... no checking for posix_memalign... yes checking whether fdatasync is declared... yes checking for fdatasync... yes checking for __attribute__((constructor))... yes checking for clock_gettime with CLOCK_PROCESS_CPUTIME_ID... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking whether htscodecs files are present... yes checking for libdeflate.h... no checking for libdeflate_deflate_compress in -ldeflate... no checking for curl/curl.h... no checking for curl_easy_pause in -lcurl... no checking for curl_easy_init in -lcurl... no configure: error: libcurl library not found Support for HTTPS and other SSL-based URLs requires routines from the libcurl library . Building HTSlib with libcurl enabled requires libcurl development files to be installed on the build machine; you may need to ensure a package such as libcurl4-{gnutls,nss,openssl}-dev (on Debian or Ubuntu Linux) or libcurl-devel (on RPM-based Linux distributions or Cygwin) is installed. Either configure with --disable-libcurl or resolve this error to build HTSlib. checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for ranlib... ranlib checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall checking for gcc options needed to detect all undeclared functions... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/param.h... yes checking whether _XOPEN_SOURCE is declared... no checking whether __get_cpuid_max is declared... no checking whether __cpuid_count is declared... no checking for x86intrin.h... no checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for gcc option to enable large file support... none needed checking shared library type for unknown-Linux... plain .so checking whether the linker supports versioned symbols... no checking whether the compiler accepts -fvisibility=hidden... yes checking build system type... riscv64-unknown-linux-gnu checking host system type... riscv64-unknown-linux-gnu checking for getpagesize... yes checking for working mmap... yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking for getauxval... yes checking for elf_aux_info... no checking for posix_memalign... yes checking whether fdatasync is declared... yes checking for fdatasync... yes checking for __attribute__((constructor))... yes checking for clock_gettime with CLOCK_PROCESS_CPUTIME_ID... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking whether htscodecs files are present... yes checking for libdeflate.h... no checking for libdeflate_deflate_compress in -ldeflate... no configure: WARNING: GCS support not enabled: requires libcurl support configure: WARNING: S3 support not enabled: requires libcurl support checking for library containing regcomp... none required configure: creating ./config.status config.status: creating config.mk config.status: creating htslib.pc.tmp config.status: creating config.h config.status: config.h is unchanged config.status: linking htscodecs_bundled.mk to htscodecs.mk /usr/lib/python3.15/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2027-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) # pysam: htslib configure options: --disable-libcurl # pysam: htslib_config HTS_CFLAGS_AVX2= # pysam: htslib_config HTS_CFLAGS_AVX512= # pysam: htslib_config HTS_CFLAGS_SSE4= # pysam: htslib_config LIBHTS_OBJS=kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o sam_mods.o simd.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o # pysam: htslib_config LIBS=-llzma -lbz2 -lz -lm # pysam: htslib_config PLATFORM=default # pysam: config_option: ENABLE_GCS=0 # pysam: config_option: ENABLE_PLUGINS=0 # pysam: config_option: ENABLE_S3=0 # pysam: config_option: HAVE_COMMONCRYPTO=0 # pysam: config_option: HAVE_HMAC=0 # pysam: config_option: HAVE_LIBBZ2=1 # pysam: config_option: HAVE_LIBCURL=0 # pysam: config_option: HAVE_LIBDEFLATE=0 # pysam: config_option: HAVE_LIBLZMA=1 # pysam: config_option: HAVE_MMAP=1 running egg_info writing pysam.egg-info/PKG-INFO writing dependency_links to pysam.egg-info/dependency_links.txt writing top-level names to pysam.egg-info/top_level.txt reading manifest file 'pysam.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'KNOWN_BUGS' warning: no files found matching 'THANKS' warning: no files found matching 'pysam/libc*.c' no previously-included directories found matching 'tests' adding license file 'COPYING' adding license file 'AUTHORS' writing manifest file 'pysam.egg-info/SOURCES.txt' # pysam: Cython 3.2.8 is available - using cythonize if necessary # pysam: htslib mode is shared # pysam: HTSLIB_CONFIGURE_OPTIONS=None # pysam: (env) CC=gcc # pysam: (env) CFLAGS=-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC # pysam: (env) LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for ranlib... ranlib checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall checking for gcc options needed to detect all undeclared functions... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/param.h... yes checking whether _XOPEN_SOURCE is declared... no checking whether __get_cpuid_max is declared... no checking whether __cpuid_count is declared... no checking for x86intrin.h... no checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for gcc option to enable large file support... none needed checking shared library type for unknown-Linux... plain .so checking whether the linker supports versioned symbols... no checking whether the compiler accepts -fvisibility=hidden... yes checking build system type... riscv64-unknown-linux-gnu checking host system type... riscv64-unknown-linux-gnu checking for getpagesize... yes checking for working mmap... yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking for getauxval... yes checking for elf_aux_info... no checking for posix_memalign... yes checking whether fdatasync is declared... yes checking for fdatasync... yes checking for __attribute__((constructor))... yes checking for clock_gettime with CLOCK_PROCESS_CPUTIME_ID... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking whether htscodecs files are present... yes checking for libdeflate.h... no checking for libdeflate_deflate_compress in -ldeflate... no checking for curl/curl.h... no checking for curl_easy_pause in -lcurl... no checking for curl_easy_init in -lcurl... no configure: error: libcurl library not found Support for HTTPS and other SSL-based URLs requires routines from the libcurl library . Building HTSlib with libcurl enabled requires libcurl development files to be installed on the build machine; you may need to ensure a package such as libcurl4-{gnutls,nss,openssl}-dev (on Debian or Ubuntu Linux) or libcurl-devel (on RPM-based Linux distributions or Cygwin) is installed. Either configure with --disable-libcurl or resolve this error to build HTSlib. checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for ranlib... ranlib checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall checking for gcc options needed to detect all undeclared functions... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/param.h... yes checking whether _XOPEN_SOURCE is declared... no checking whether __get_cpuid_max is declared... no checking whether __cpuid_count is declared... no checking for x86intrin.h... no checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for gcc option to enable large file support... none needed checking shared library type for unknown-Linux... plain .so checking whether the linker supports versioned symbols... no checking whether the compiler accepts -fvisibility=hidden... yes checking build system type... riscv64-unknown-linux-gnu checking host system type... riscv64-unknown-linux-gnu checking for getpagesize... yes checking for working mmap... yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking for getauxval... yes checking for elf_aux_info... no checking for posix_memalign... yes checking whether fdatasync is declared... yes checking for fdatasync... yes checking for __attribute__((constructor))... yes checking for clock_gettime with CLOCK_PROCESS_CPUTIME_ID... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking whether htscodecs files are present... yes checking for libdeflate.h... no checking for libdeflate_deflate_compress in -ldeflate... no configure: WARNING: GCS support not enabled: requires libcurl support configure: WARNING: S3 support not enabled: requires libcurl support checking for library containing regcomp... none required configure: creating ./config.status config.status: creating config.mk config.status: creating htslib.pc.tmp config.status: creating config.h config.status: config.h is unchanged config.status: linking htscodecs_bundled.mk to htscodecs.mk /usr/lib/python3.15/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2027-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) # pysam: htslib configure options: --disable-libcurl # pysam: htslib_config HTS_CFLAGS_AVX2= # pysam: htslib_config HTS_CFLAGS_AVX512= # pysam: htslib_config HTS_CFLAGS_SSE4= # pysam: htslib_config LIBHTS_OBJS=kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o sam_mods.o simd.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o # pysam: htslib_config LIBS=-llzma -lbz2 -lz -lm # pysam: htslib_config PLATFORM=default # pysam: config_option: ENABLE_GCS=0 # pysam: config_option: ENABLE_PLUGINS=0 # pysam: config_option: ENABLE_S3=0 # pysam: config_option: HAVE_COMMONCRYPTO=0 # pysam: config_option: HAVE_HMAC=0 # pysam: config_option: HAVE_LIBBZ2=1 # pysam: config_option: HAVE_LIBCURL=0 # pysam: config_option: HAVE_LIBDEFLATE=0 # pysam: config_option: HAVE_LIBLZMA=1 # pysam: config_option: HAVE_MMAP=1 running dist_info writing pysam.egg-info/PKG-INFO writing dependency_links to pysam.egg-info/dependency_links.txt writing top-level names to pysam.egg-info/top_level.txt reading manifest file 'pysam.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'KNOWN_BUGS' warning: no files found matching 'THANKS' warning: no files found matching 'pysam/libc*.c' no previously-included directories found matching 'tests' adding license file 'COPYING' adding license file 'AUTHORS' writing manifest file 'pysam.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam-0.24.0.dist-info' + cat /builddir/build/BUILD/python-pysam-0.24.0-build/python-pysam-0.24.0-4.fc45.riscv64-pyproject-buildrequires + rm -rfv pysam-0.24.0.dist-info/ removed 'pysam-0.24.0.dist-info/top_level.txt' removed 'pysam-0.24.0.dist-info/METADATA' removed 'pysam-0.24.0.dist-info/licenses/COPYING' removed 'pysam-0.24.0.dist-info/licenses/AUTHORS' removed directory 'pysam-0.24.0.dist-info/licenses' removed directory 'pysam-0.24.0.dist-info/' + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.P4YxoP + umask 022 + cd /builddir/build/BUILD/python-pysam-0.24.0-build + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd pysam-0.24.0 + export FORCE_CYTHON=1 + FORCE_CYTHON=1 + mkdir -p /builddir/build/BUILD/python-pysam-0.24.0-build/.pyproject-builddir + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + VALAFLAGS=-g + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + LT_SYS_LIBRARY_PATH=/usr/lib64: + CC=gcc + CXX=g++ + TMPDIR=/builddir/build/BUILD/python-pysam-0.24.0-build/.pyproject-builddir + /usr/bin/python3 -Bs /usr/lib/rpm/redhat/pyproject_wheel.py /builddir/build/BUILD/python-pysam-0.24.0-build/pyproject-wheeldir Processing ./. Preparing metadata (pyproject.toml): started Running command Preparing metadata (pyproject.toml) # pysam: Cython 3.2.8 is available - using cythonize if necessary # pysam: htslib mode is shared # pysam: HTSLIB_CONFIGURE_OPTIONS=None # pysam: (env) CC=gcc # pysam: (env) CFLAGS=-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC # pysam: (env) LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for ranlib... ranlib checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall checking for gcc options needed to detect all undeclared functions... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/param.h... yes checking whether _XOPEN_SOURCE is declared... no checking whether __get_cpuid_max is declared... no checking whether __cpuid_count is declared... no checking for x86intrin.h... no checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for gcc option to enable large file support... none needed checking shared library type for unknown-Linux... plain .so checking whether the linker supports versioned symbols... no checking whether the compiler accepts -fvisibility=hidden... yes checking build system type... riscv64-unknown-linux-gnu checking host system type... riscv64-unknown-linux-gnu checking for getpagesize... yes checking for working mmap... yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking for getauxval... yes checking for elf_aux_info... no checking for posix_memalign... yes checking whether fdatasync is declared... yes checking for fdatasync... yes checking for __attribute__((constructor))... yes checking for clock_gettime with CLOCK_PROCESS_CPUTIME_ID... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking whether htscodecs files are present... yes checking for libdeflate.h... no checking for libdeflate_deflate_compress in -ldeflate... no checking for curl/curl.h... no checking for curl_easy_pause in -lcurl... no checking for curl_easy_init in -lcurl... no configure: error: libcurl library not found Support for HTTPS and other SSL-based URLs requires routines from the libcurl library . Building HTSlib with libcurl enabled requires libcurl development files to be installed on the build machine; you may need to ensure a package such as libcurl4-{gnutls,nss,openssl}-dev (on Debian or Ubuntu Linux) or libcurl-devel (on RPM-based Linux distributions or Cygwin) is installed. Either configure with --disable-libcurl or resolve this error to build HTSlib. checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for ranlib... ranlib checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall checking for gcc options needed to detect all undeclared functions... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/param.h... yes checking whether _XOPEN_SOURCE is declared... no checking whether __get_cpuid_max is declared... no checking whether __cpuid_count is declared... no checking for x86intrin.h... no checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for gcc option to enable large file support... none needed checking shared library type for unknown-Linux... plain .so checking whether the linker supports versioned symbols... no checking whether the compiler accepts -fvisibility=hidden... yes checking build system type... riscv64-unknown-linux-gnu checking host system type... riscv64-unknown-linux-gnu checking for getpagesize... yes checking for working mmap... yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking for getauxval... yes checking for elf_aux_info... no checking for posix_memalign... yes checking whether fdatasync is declared... yes checking for fdatasync... yes checking for __attribute__((constructor))... yes checking for clock_gettime with CLOCK_PROCESS_CPUTIME_ID... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking whether htscodecs files are present... yes checking for libdeflate.h... no checking for libdeflate_deflate_compress in -ldeflate... no configure: WARNING: GCS support not enabled: requires libcurl support configure: WARNING: S3 support not enabled: requires libcurl support checking for library containing regcomp... none required configure: creating ./config.status config.status: creating config.mk config.status: creating htslib.pc.tmp config.status: creating config.h config.status: config.h is unchanged config.status: linking htscodecs_bundled.mk to htscodecs.mk /usr/lib/python3.15/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2027-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) # pysam: htslib configure options: --disable-libcurl # pysam: htslib_config HTS_CFLAGS_AVX2= # pysam: htslib_config HTS_CFLAGS_AVX512= # pysam: htslib_config HTS_CFLAGS_SSE4= # pysam: htslib_config LIBHTS_OBJS=kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o sam_mods.o simd.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o # pysam: htslib_config LIBS=-llzma -lbz2 -lz -lm # pysam: htslib_config PLATFORM=default # pysam: config_option: ENABLE_GCS=0 # pysam: config_option: ENABLE_PLUGINS=0 # pysam: config_option: ENABLE_S3=0 # pysam: config_option: HAVE_COMMONCRYPTO=0 # pysam: config_option: HAVE_HMAC=0 # pysam: config_option: HAVE_LIBBZ2=1 # pysam: config_option: HAVE_LIBCURL=0 # pysam: config_option: HAVE_LIBDEFLATE=0 # pysam: config_option: HAVE_LIBLZMA=1 # pysam: config_option: HAVE_MMAP=1 running dist_info creating /builddir/build/BUILD/python-pysam-0.24.0-build/.pyproject-builddir/pip-modern-metadata-rz7nhgqu/pysam.egg-info writing /builddir/build/BUILD/python-pysam-0.24.0-build/.pyproject-builddir/pip-modern-metadata-rz7nhgqu/pysam.egg-info/PKG-INFO writing dependency_links to /builddir/build/BUILD/python-pysam-0.24.0-build/.pyproject-builddir/pip-modern-metadata-rz7nhgqu/pysam.egg-info/dependency_links.txt writing top-level names to /builddir/build/BUILD/python-pysam-0.24.0-build/.pyproject-builddir/pip-modern-metadata-rz7nhgqu/pysam.egg-info/top_level.txt writing manifest file '/builddir/build/BUILD/python-pysam-0.24.0-build/.pyproject-builddir/pip-modern-metadata-rz7nhgqu/pysam.egg-info/SOURCES.txt' reading manifest file '/builddir/build/BUILD/python-pysam-0.24.0-build/.pyproject-builddir/pip-modern-metadata-rz7nhgqu/pysam.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'KNOWN_BUGS' warning: no files found matching 'THANKS' warning: no files found matching 'pysam/libc*.c' no previously-included directories found matching 'tests' adding license file 'COPYING' adding license file 'AUTHORS' writing manifest file '/builddir/build/BUILD/python-pysam-0.24.0-build/.pyproject-builddir/pip-modern-metadata-rz7nhgqu/pysam.egg-info/SOURCES.txt' creating '/builddir/build/BUILD/python-pysam-0.24.0-build/.pyproject-builddir/pip-modern-metadata-rz7nhgqu/pysam-0.24.0.dist-info' Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: pysam Building wheel for pysam (pyproject.toml): started Running command Building wheel for pysam (pyproject.toml) # pysam: Cython 3.2.8 is available - using cythonize if necessary # pysam: htslib mode is shared # pysam: HTSLIB_CONFIGURE_OPTIONS=None # pysam: (env) CC=gcc # pysam: (env) CFLAGS=-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC # pysam: (env) LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for ranlib... ranlib checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall checking for gcc options needed to detect all undeclared functions... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/param.h... yes checking whether _XOPEN_SOURCE is declared... no checking whether __get_cpuid_max is declared... no checking whether __cpuid_count is declared... no checking for x86intrin.h... no checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for gcc option to enable large file support... none needed checking shared library type for unknown-Linux... plain .so checking whether the linker supports versioned symbols... no checking whether the compiler accepts -fvisibility=hidden... yes checking build system type... riscv64-unknown-linux-gnu checking host system type... riscv64-unknown-linux-gnu checking for getpagesize... yes checking for working mmap... yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking for getauxval... yes checking for elf_aux_info... no checking for posix_memalign... yes checking whether fdatasync is declared... yes checking for fdatasync... yes checking for __attribute__((constructor))... yes checking for clock_gettime with CLOCK_PROCESS_CPUTIME_ID... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking whether htscodecs files are present... yes checking for libdeflate.h... no checking for libdeflate_deflate_compress in -ldeflate... no checking for curl/curl.h... no checking for curl_easy_pause in -lcurl... no checking for curl_easy_init in -lcurl... no configure: error: libcurl library not found Support for HTTPS and other SSL-based URLs requires routines from the libcurl library . Building HTSlib with libcurl enabled requires libcurl development files to be installed on the build machine; you may need to ensure a package such as libcurl4-{gnutls,nss,openssl}-dev (on Debian or Ubuntu Linux) or libcurl-devel (on RPM-based Linux distributions or Cygwin) is installed. Either configure with --disable-libcurl or resolve this error to build HTSlib. checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for ranlib... ranlib checking for grep that handles long lines and -e... /usr/bin/grep checking for C compiler warning flags... -Wall checking for gcc options needed to detect all undeclared functions... none needed checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for sys/param.h... yes checking whether _XOPEN_SOURCE is declared... no checking whether __get_cpuid_max is declared... no checking whether __cpuid_count is declared... no checking for x86intrin.h... no checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for gcc option to enable large file support... none needed checking shared library type for unknown-Linux... plain .so checking whether the linker supports versioned symbols... no checking whether the compiler accepts -fvisibility=hidden... yes checking build system type... riscv64-unknown-linux-gnu checking host system type... riscv64-unknown-linux-gnu checking for getpagesize... yes checking for working mmap... yes checking for gmtime_r... yes checking for fsync... yes checking for drand48... yes checking for srand48_deterministic... no checking for getauxval... yes checking for elf_aux_info... no checking for posix_memalign... yes checking whether fdatasync is declared... yes checking for fdatasync... yes checking for __attribute__((constructor))... yes checking for clock_gettime with CLOCK_PROCESS_CPUTIME_ID... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing recv... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking whether htscodecs files are present... yes checking for libdeflate.h... no checking for libdeflate_deflate_compress in -ldeflate... no configure: WARNING: GCS support not enabled: requires libcurl support configure: WARNING: S3 support not enabled: requires libcurl support checking for library containing regcomp... none required configure: creating ./config.status config.status: creating config.mk config.status: creating htslib.pc.tmp config.status: creating config.h config.status: config.h is unchanged config.status: linking htscodecs_bundled.mk to htscodecs.mk /usr/lib/python3.15/site-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2027-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) # pysam: htslib configure options: --disable-libcurl # pysam: htslib_config HTS_CFLAGS_AVX2= # pysam: htslib_config HTS_CFLAGS_AVX512= # pysam: htslib_config HTS_CFLAGS_SSE4= # pysam: htslib_config LIBHTS_OBJS=kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o sam_mods.o simd.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o # pysam: htslib_config LIBS=-llzma -lbz2 -lz -lm # pysam: htslib_config PLATFORM=default # pysam: config_option: ENABLE_GCS=0 # pysam: config_option: ENABLE_PLUGINS=0 # pysam: config_option: ENABLE_S3=0 # pysam: config_option: HAVE_COMMONCRYPTO=0 # pysam: config_option: HAVE_HMAC=0 # pysam: config_option: HAVE_LIBBZ2=1 # pysam: config_option: HAVE_LIBCURL=0 # pysam: config_option: HAVE_LIBDEFLATE=0 # pysam: config_option: HAVE_LIBLZMA=1 # pysam: config_option: HAVE_MMAP=1 running bdist_wheel running build running build_py creating build/lib.linux-riscv64-cpython-315/pysam copying pysam/Pileup.py -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/__init__.py -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/bcftools.py -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/samtools.py -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/utils.py -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/version.py -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/config.py -> build/lib.linux-riscv64-cpython-315/pysam creating build/lib.linux-riscv64-cpython-315/pysam/include copying pysam/include/__init__.py -> build/lib.linux-riscv64-cpython-315/pysam/include running egg_info writing pysam.egg-info/PKG-INFO writing dependency_links to pysam.egg-info/dependency_links.txt writing top-level names to pysam.egg-info/top_level.txt reading manifest file 'pysam.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'KNOWN_BUGS' warning: no files found matching 'THANKS' warning: no files found matching 'pysam/libc*.c' no previously-included directories found matching 'tests' adding license file 'COPYING' adding license file 'AUTHORS' writing manifest file 'pysam.egg-info/SOURCES.txt' /usr/lib/python3.15/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'pysam.include.htslib.cram' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pysam.include.htslib.cram' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pysam.include.htslib.cram' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pysam.include.htslib.cram' to be distributed and are already explicitly excluding 'pysam.include.htslib.cram' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.15/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'pysam.include.htslib.htscodecs.htscodecs' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pysam.include.htslib.htscodecs.htscodecs' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pysam.include.htslib.htscodecs.htscodecs' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pysam.include.htslib.htscodecs.htscodecs' to be distributed and are already explicitly excluding 'pysam.include.htslib.htscodecs.htscodecs' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.15/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'pysam.include.htslib.m4' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pysam.include.htslib.m4' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pysam.include.htslib.m4' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pysam.include.htslib.m4' to be distributed and are already explicitly excluding 'pysam.include.htslib.m4' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.15/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'pysam.include.htslib.os' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pysam.include.htslib.os' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pysam.include.htslib.os' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pysam.include.htslib.os' to be distributed and are already explicitly excluding 'pysam.include.htslib.os' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) /usr/lib/python3.15/site-packages/setuptools/command/build_py.py:215: _Warning: Package 'pysam.include.samtools.lz4' is absent from the `packages` configuration. !! ******************************************************************************** ############################ # Package would be ignored # ############################ Python recognizes 'pysam.include.samtools.lz4' as an importable package[^1], but it is absent from setuptools' `packages` configuration. This leads to an ambiguous overall configuration. If you want to distribute this package, please make sure that 'pysam.include.samtools.lz4' is explicitly added to the `packages` configuration field. Alternatively, you can also rely on setuptools' discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html If you don't want 'pysam.include.samtools.lz4' to be distributed and are already explicitly excluding 'pysam.include.samtools.lz4' via `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, you can try to use `exclude_package_data`, or `include-package-data=False` in combination with a more fine grained `package-data` configuration. You can read more about "package data files" on setuptools documentation page: - https://setuptools.pypa.io/en/latest/userguide/datafiles.html [^1]: For Python, any directory (with suitable naming) can be imported, even if it does not contain any `.py` files. On the other hand, currently there is no concept of package data directory, all directories are treated like packages. ******************************************************************************** !! check.warn(importable) copying pysam/conftest_cstd.c -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/htslib_util.c -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/htslib_util.h -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/libcalignedsegment.pxd -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/libcalignedsegment.pyi -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/libcalignedsegment.pyx -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/libcalignmentfile.pxd -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/libcalignmentfile.pyi -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/libcalignmentfile.pyx -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/libcbcf.pxd -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/libcbcf.pyi -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/libcbcf.pyx -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/libcbcftools.pxd -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/libcbcftools.pyi -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/libcbcftools.pyx -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/libcbgzf.pxd -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/libcbgzf.pyi -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/libcbgzf.pyx -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/libcfaidx.pxd -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/libcfaidx.pyi -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/libcfaidx.pyx -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/libchtslib.pxd -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/libchtslib.pyi -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/libchtslib.pyx -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/libcsamfile.pxd -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/libcsamfile.pyi -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/libcsamfile.pyx -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/libcsamtools.pxd -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/libcsamtools.pyi -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/libcsamtools.pyx -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/libctabix.pxd -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/libctabix.pyi -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/libctabix.pyx -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/libctabixproxies.pxd -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/libctabixproxies.pyi -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/libctabixproxies.pyx -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/libcutils.pxd -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/libcutils.pyi -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/libcutils.pyx -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/libcvcf.pxd -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/libcvcf.pyi -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/libcvcf.pyx -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/py.typed -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/version.h -> build/lib.linux-riscv64-cpython-315/pysam copying pysam/version.pyi -> build/lib.linux-riscv64-cpython-315/pysam creating build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/LICENSE -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/README -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/amplicon_stats.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/amplicon_stats.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam.h -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam2depth.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam2depth.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_addrprg.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_addrprg.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_ampliconclip.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_ampliconclip.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_ampliconclip.h -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_aux.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_aux.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_cat.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_cat.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_checksum.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_checksum.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_color.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_color.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_consensus.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_consensus.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_consensus_tab.h -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_fastq.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_fastq.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_flags.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_flags.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_import.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_import.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_index.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_index.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_lpileup.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_lpileup.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_lpileup.h -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_markdup.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_markdup.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_mate.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_mate.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_md.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_md.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_plbuf.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_plbuf.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_plbuf.h -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_plcmd.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_plcmd.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_quickcheck.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_quickcheck.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_reheader.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_reheader.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_rmdup.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_rmdup.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_rmdupse.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_rmdupse.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_samples.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_samples.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_sort.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_sort.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_split.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_split.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_stat.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bam_stat.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bamshuf.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bamshuf.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bamtk.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bamtk.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bedcov.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bedcov.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bedidx.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bedidx.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/bedidx.h -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/consensus_pileup.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/consensus_pileup.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/consensus_pileup.h -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/coverage.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/coverage.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/cram_size.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/cram_size.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/cut_target.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/cut_target.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/dict.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/dict.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/faidx.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/faidx.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/padding.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/padding.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/phase.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/phase.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/reference.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/reference.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/reset.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/reset.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/sam_opts.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/sam_opts.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/sam_opts.h -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/sam_utils.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/sam_utils.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/sam_utils.h -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/sam_view.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/sam_view.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/sample.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/sample.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/sample.h -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/samtools.h -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/samtools.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/samtools.pysam.h -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/splaysort.h -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/stats.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/stats.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/stats_isize.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/stats_isize.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/stats_isize.h -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/tmp_file.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/tmp_file.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/tmp_file.h -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools copying samtools/version.sh -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools creating build/lib.linux-riscv64-cpython-315/pysam/include/samtools/lz4 copying samtools/lz4/LICENSE -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools/lz4 copying samtools/lz4/lz4.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools/lz4 copying samtools/lz4/lz4.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools/lz4 copying samtools/lz4/lz4.h -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools/lz4 copying samtools/config.h -> build/lib.linux-riscv64-cpython-315/pysam/include/samtools creating build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/HMM.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/HMM.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/HMM.h -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/LICENSE -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/README -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/abuf.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/abuf.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/abuf.h -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/bam2bcf.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/bam2bcf.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/bam2bcf.h -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/bam2bcf_edlib.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/bam2bcf_edlib.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/bam2bcf_iaux.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/bam2bcf_iaux.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/bam2bcf_indel.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/bam2bcf_indel.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/bam_sample.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/bam_sample.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/bam_sample.h -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/bcftools.h -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/bcftools.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/bcftools.pysam.h -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/bin.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/bin.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/bin.h -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/call.h -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/ccall.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/ccall.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/cigar_state.h -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/cols.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/cols.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/cols.h -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/consensus.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/consensus.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/convert.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/convert.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/convert.h -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/csq.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/csq.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/dbuf.h -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/dist.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/dist.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/dist.h -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/edlib.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/edlib.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/edlib.h -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/em.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/em.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/extsort.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/extsort.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/extsort.h -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/filter.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/filter.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/filter.h -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/gff.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/gff.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/gff.h -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/gvcf.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/gvcf.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/gvcf.h -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/hclust.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/hclust.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/hclust.h -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/hex.h -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/khash_str2str.h -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/kheap.h -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/kmin.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/kmin.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/kmin.h -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/main.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/main.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/mcall.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/mcall.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/mpileup.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/mpileup.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/mw.h -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/ploidy.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/ploidy.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/ploidy.h -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/prob1.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/prob1.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/prob1.h -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/rbuf.h -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/read_consensus.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/read_consensus.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/read_consensus.h -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/regidx.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/regidx.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/regidx.h -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/reheader.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/reheader.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/smpl_ilist.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/smpl_ilist.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/smpl_ilist.h -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/str_finder.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/str_finder.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/str_finder.h -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/tabix.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/tabix.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/tsv2vcf.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/tsv2vcf.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/tsv2vcf.h -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/utlist.h -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/variantkey.h -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcfannotate.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcfannotate.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcfbuf.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcfbuf.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcfbuf.h -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcfcall.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcfcall.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcfcnv.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcfcnv.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcfconcat.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcfconcat.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcfconvert.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcfconvert.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcffilter.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcffilter.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcfgtcheck.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcfgtcheck.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcfhead.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcfhead.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcfindex.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcfindex.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcfisec.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcfisec.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcfmerge.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcfmerge.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcfnorm.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcfnorm.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcfplugin.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcfplugin.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcfquery.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcfquery.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcfroh.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcfroh.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcfsom.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcfsom.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcfsort.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcfsort.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcfstats.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcfstats.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcfview.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcfview.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcmp.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcmp.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/vcmp.h -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/version.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/version.c.pysam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/version.sh -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools copying bcftools/config.h -> build/lib.linux-riscv64-cpython-315/pysam/include/bcftools creating build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/LICENSE -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/Makefile -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/README -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/bcf_sr_sort.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/bcf_sr_sort.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/bgzf.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/bgzf_internal.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/builddir_vars.mk.in -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/config.guess -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/config.h.in -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/config.mk.in -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/config.sub -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/configure -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/configure.ac -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/errmod.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/faidx.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/fuzz_settings.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/header.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/header.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/hfile.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/hfile_gcs.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/hfile_internal.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/hfile_libcurl.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/hfile_s3.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/hts.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/hts_expr.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/hts_internal.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/hts_os.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/hts_time_funcs.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/htscodecs_bundled.mk -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/htscodecs_external.mk -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/htslib.mk -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/htslib.pc.in -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/htslib_vars.mk -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/kfunc.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/kstring.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/md5.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/multipart.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/plugin.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/probaln.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/realn.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/regidx.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/region.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/sam.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/sam_internal.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/sam_mods.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/simd.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/synced_bcf_reader.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/tbx.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/textutils.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/textutils_internal.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/thread_pool.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/thread_pool_internal.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/vcf.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/vcf_sweep.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/vcfutils.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib copying htslib/version.sh -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib creating build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram copying htslib/cram/cram.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram copying htslib/cram/cram_codecs.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram copying htslib/cram/cram_codecs.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram copying htslib/cram/cram_decode.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram copying htslib/cram/cram_decode.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram copying htslib/cram/cram_encode.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram copying htslib/cram/cram_encode.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram copying htslib/cram/cram_external.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram copying htslib/cram/cram_index.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram copying htslib/cram/cram_index.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram copying htslib/cram/cram_io.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram copying htslib/cram/cram_io.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram copying htslib/cram/cram_samtools.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram copying htslib/cram/cram_stats.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram copying htslib/cram/cram_stats.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram copying htslib/cram/cram_structs.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram copying htslib/cram/mFILE.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram copying htslib/cram/mFILE.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram copying htslib/cram/misc.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram copying htslib/cram/open_trace_file.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram copying htslib/cram/open_trace_file.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram copying htslib/cram/os.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram copying htslib/cram/pooled_alloc.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram copying htslib/cram/pooled_alloc.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram copying htslib/cram/string_alloc.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram copying htslib/cram/string_alloc.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram creating build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/arith_dynamic.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/arith_dynamic.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/c_range_coder.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/c_simple_model.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/fqzcomp_qual.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/fqzcomp_qual.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/htscodecs.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/htscodecs.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/htscodecs_endian.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/pack.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/pack.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/permute.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/pooled_alloc.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_byte.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static16_int.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static32x16pr.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static32x16pr.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static32x16pr_neon.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static4x16.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_static4x16pr.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rANS_word.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rle.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/rle.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/tokenise_name3.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/tokenise_name3.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/utils.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/utils.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/varint.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/varint2.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs copying htslib/htscodecs/htscodecs/version.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs creating build/lib.linux-riscv64-cpython-315/pysam/include/htslib/m4 copying htslib/m4/hts_check_compile_flags_needed.m4 -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/m4 copying htslib/m4/hts_hide_dynamic_syms.m4 -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/m4 copying htslib/m4/hts_prog_cc_warnings.m4 -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/m4 copying htslib/m4/pkg.m4 -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/m4 creating build/lib.linux-riscv64-cpython-315/pysam/include/htslib/os copying htslib/os/lzma_stub.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/os copying htslib/os/rand.c -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/os copying htslib/config.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib creating build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib copying htslib/htslib/bgzf.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib copying htslib/htslib/cram.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib copying htslib/htslib/faidx.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib copying htslib/htslib/hfile.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib copying htslib/htslib/hts.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib copying htslib/htslib/hts_defs.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib copying htslib/htslib/hts_endian.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib copying htslib/htslib/hts_expr.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib copying htslib/htslib/hts_log.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib copying htslib/htslib/hts_os.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib copying htslib/htslib/kbitset.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib copying htslib/htslib/kfunc.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib copying htslib/htslib/khash.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib copying htslib/htslib/khash_str2int.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib copying htslib/htslib/klist.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib copying htslib/htslib/knetfile.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib copying htslib/htslib/kroundup.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib copying htslib/htslib/kseq.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib copying htslib/htslib/ksort.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib copying htslib/htslib/kstring.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib copying htslib/htslib/regidx.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib copying htslib/htslib/sam.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib copying htslib/htslib/synced_bcf_reader.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib copying htslib/htslib/tbx.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib copying htslib/htslib/thread_pool.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib copying htslib/htslib/vcf.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib copying htslib/htslib/vcf_sweep.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib copying htslib/htslib/vcfutils.h -> build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib running build_ext checking for gcc option to enable C99 features... creating build/temp.linux-riscv64-cpython-315/pysam gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/usr/include/python3.15 -c pysam/conftest_cstd.c -o build/temp.linux-riscv64-cpython-315/pysam/conftest_cstd.o gcc option to enable C99 features: none needed creating htslib/config_vars.h for 'pysam.libchtslib' extension building 'libhts.a' gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o kfunc.o kfunc.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o kstring.o kstring.c kstring.c: In function ‘boyer_moore’: kstring.c:454:24: warning: return discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 454 | return memchr(str, pat[0], n); | ^~~~~~ gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o bcf_sr_sort.o bcf_sr_sort.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o bgzf.o bgzf.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o errmod.o errmod.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o faidx.o faidx.c faidx.c: In function ‘fai_path’: faidx.c:1042:25: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 1042 | char *fai_tmp = strstr(fa, HTS_IDX_DELIM); | ^~~~~~ gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o header.o header.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hfile.o hfile.c echo '#define HTS_VERSION_TEXT "1.23.1"' > version.h gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hts.o hts.c hts.c: In function ‘hts_open_format’: hts.c:941:33: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 941 | char *rmme = NULL, *fnidx = strstr(fn, HTS_IDX_DELIM); | ^~~~~~ hts.c: In function ‘hts_hopen’: hts.c:1477:13: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 1477 | if ((cp = strchr(mode, ','))) { | ^ hts.c: In function ‘idx_find_and_load’: hts.c:4922:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 4922 | char *fnidx = strstr(fn, HTS_IDX_DELIM); | ^~~~~~ gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hts_expr.o hts_expr.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o hts_os.o hts_os.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o md5.o md5.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o multipart.o multipart.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o probaln.o probaln.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o realn.o realn.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o regidx.o regidx.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o region.o region.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o sam.o sam.c sam.c: In function ‘sam_open_mode_opts’: sam.c:5235:15: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 5235 | if ((opts = strchr(format, ','))) { | ^ gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o sam_mods.o sam_mods.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o simd.o simd.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o synced_bcf_reader.o synced_bcf_reader.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o vcf_sweep.o vcf_sweep.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o tbx.o tbx.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o textutils.o textutils.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o thread_pool.o thread_pool.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o vcf.o vcf.c vcf.c: In function ‘bcf_get_version’: vcf.c:167:17: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 167 | if (!(major = strstr(version, vcf))) { //bad format | ^ gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o vcfutils.o vcfutils.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_codecs.o cram/cram_codecs.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_decode.o cram/cram_decode.c cram/cram_decode.c: In function ‘cram_decode_seq’: cram/cram_decode.c:1245:35: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 1245 | char *N = memchr(refp, 'N', frag_len); | ^~~~~~ gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_encode.o cram/cram_encode.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_external.o cram/cram_external.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_index.o cram/cram_index.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_io.o cram/cram_io.c cram/cram_io.c: In function ‘refs_load_fai’: cram/cram_io.c:2561:22: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2561 | char *fn_delim = strstr(fn, HTS_IDX_DELIM); | ^~~~~~ cram/cram_io.c: In function ‘cram_dopen’: cram/cram_io.c:5357:29: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 5357 | fd->prefix = strdup((cp = strrchr(filename, '/')) ? cp+1 : filename); | ^ gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/cram_stats.o cram/cram_stats.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/mFILE.o cram/mFILE.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/open_trace_file.o cram/open_trace_file.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/pooled_alloc.o cram/pooled_alloc.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o cram/string_alloc.o cram/string_alloc.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/arith_dynamic.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/fqzcomp_qual.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/htscodecs.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/pack.o htscodecs/htscodecs/pack.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static4x16pr.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx2.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_avx512.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_sse4.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr_neon.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static32x16pr.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rANS_static.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/rle.o htscodecs/htscodecs/rle.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/tokenise_name3.c gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fvisibility=hidden -I. -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement -c -o htscodecs/htscodecs/utils.o htscodecs/htscodecs/utils.c ar -rc libhts.a kfunc.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o header.o hfile.o hts.o hts_expr.o hts_os.o md5.o multipart.o probaln.o realn.o regidx.o region.o sam.o sam_mods.o simd.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_stats.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/string_alloc.o htscodecs/htscodecs/arith_dynamic.o htscodecs/htscodecs/fqzcomp_qual.o htscodecs/htscodecs/htscodecs.o htscodecs/htscodecs/pack.o htscodecs/htscodecs/rANS_static4x16pr.o htscodecs/htscodecs/rANS_static32x16pr_avx2.o htscodecs/htscodecs/rANS_static32x16pr_avx512.o htscodecs/htscodecs/rANS_static32x16pr_sse4.o htscodecs/htscodecs/rANS_static32x16pr_neon.o htscodecs/htscodecs/rANS_static32x16pr.o htscodecs/htscodecs/rANS_static.o htscodecs/htscodecs/rle.o htscodecs/htscodecs/tokenise_name3.o htscodecs/htscodecs/utils.o ranlib libhts.a Compiling pysam/libchtslib.pyx because it changed. [1/1] Cythonizing pysam/libchtslib.pyx building 'pysam.libchtslib' extension gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c pysam/htslib_util.c -o build/temp.linux-riscv64-cpython-315/pysam/htslib_util.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c pysam/libchtslib.c -o build/temp.linux-riscv64-cpython-315/pysam/libchtslib.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC build/temp.linux-riscv64-cpython-315/pysam/htslib_util.o build/temp.linux-riscv64-cpython-315/pysam/libchtslib.o htslib/kfunc.o htslib/kstring.o htslib/bcf_sr_sort.o htslib/bgzf.o htslib/errmod.o htslib/faidx.o htslib/header.o htslib/hfile.o htslib/hts.o htslib/hts_expr.o htslib/hts_os.o htslib/md5.o htslib/multipart.o htslib/probaln.o htslib/realn.o htslib/regidx.o htslib/region.o htslib/sam.o htslib/sam_mods.o htslib/simd.o htslib/synced_bcf_reader.o htslib/vcf_sweep.o htslib/tbx.o htslib/textutils.o htslib/thread_pool.o htslib/vcf.o htslib/vcfutils.o htslib/cram/cram_codecs.o htslib/cram/cram_decode.o htslib/cram/cram_encode.o htslib/cram/cram_external.o htslib/cram/cram_index.o htslib/cram/cram_io.o htslib/cram/cram_stats.o htslib/cram/mFILE.o htslib/cram/open_trace_file.o htslib/cram/pooled_alloc.o htslib/cram/string_alloc.o htslib/htscodecs/htscodecs/arith_dynamic.o htslib/htscodecs/htscodecs/fqzcomp_qual.o htslib/htscodecs/htscodecs/htscodecs.o htslib/htscodecs/htscodecs/pack.o htslib/htscodecs/htscodecs/rANS_static4x16pr.o htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.o htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.o htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.o htslib/htscodecs/htscodecs/rANS_static32x16pr_neon.o htslib/htscodecs/htscodecs/rANS_static32x16pr.o htslib/htscodecs/htscodecs/rANS_static.o htslib/htscodecs/htscodecs/rle.o htslib/htscodecs/htscodecs/tokenise_name3.o htslib/htscodecs/htscodecs/utils.o -L/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -L/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -Lbuild/lib.linux-riscv64-cpython-315/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -o build/lib.linux-riscv64-cpython-315/pysam/libchtslib.cpython-315-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN creating samtools/samtools_config_vars.h for 'pysam.libcsamtools' extension Compiling pysam/libcsamtools.pyx because it changed. [1/1] Cythonizing pysam/libcsamtools.pyx building 'pysam.libcsamtools' extension creating build/temp.linux-riscv64-cpython-315/samtools creating build/temp.linux-riscv64-cpython-315/samtools/lz4 gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c pysam/libcsamtools.c -o build/temp.linux-riscv64-cpython-315/pysam/libcsamtools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/amplicon_stats.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/amplicon_stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/bam.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/bam.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/bam2depth.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/bam2depth.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/bam_addrprg.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/bam_addrprg.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/bam_ampliconclip.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/bam_ampliconclip.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/bam_aux.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/bam_aux.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/bam_cat.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/bam_cat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/bam_checksum.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/bam_checksum.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/bam_color.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/bam_color.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/bam_consensus.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/bam_consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/bam_fastq.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/bam_fastq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/bam_flags.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/bam_flags.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/bam_import.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/bam_import.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/bam_index.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/bam_index.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/bam_lpileup.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/bam_lpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/bam_markdup.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/bam_markdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/bam_mate.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/bam_mate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/bam_md.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/bam_md.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/bam_plbuf.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/bam_plbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/bam_plcmd.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/bam_plcmd.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/bam_quickcheck.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/bam_quickcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/bam_reheader.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/bam_reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/bam_rmdup.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/bam_rmdup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/bam_rmdupse.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/bam_rmdupse.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/bam_samples.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/bam_samples.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/bam_sort.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/bam_sort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/bam_split.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/bam_split.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement samtools/bam_split.c.pysam.c: In function ‘prep_sam_file’: samtools/bam_split.c.pysam.c:381:20: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 381 | char *dirsep = strrchr(opts->merged_input_name, '/'); | ^~~~~~~ samtools/bam_split.c.pysam.c: In function ‘init’: samtools/bam_split.c.pysam.c:643:20: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 643 | char* dirsep = strrchr(opts->merged_input_name, '/'); | ^~~~~~~ gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/bam_stat.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/bam_stat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/bamshuf.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/bamshuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/bamtk.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/bamtk.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/bedcov.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/bedcov.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/bedidx.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/bedidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/consensus_pileup.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/consensus_pileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/coverage.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/coverage.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/cram_size.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/cram_size.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/cut_target.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/cut_target.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/dict.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/dict.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/faidx.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/faidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/lz4/lz4.c -o build/temp.linux-riscv64-cpython-315/samtools/lz4/lz4.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/padding.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/padding.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/phase.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/phase.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/reference.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/reference.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/reset.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/reset.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/sam_opts.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/sam_opts.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/sam_utils.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/sam_utils.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement samtools/sam_utils.c.pysam.c: In function ‘auto_index’: samtools/sam_utils.c.pysam.c:124:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 124 | char *delim = strstr(fn, HTS_IDX_DELIM); | ^~~~~~ gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/sam_view.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/sam_view.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/sample.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/samtools.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/samtools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/stats.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/stats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/stats_isize.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/stats_isize.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c samtools/tmp_file.c.pysam.c -o build/temp.linux-riscv64-cpython-315/samtools/tmp_file.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC build/temp.linux-riscv64-cpython-315/pysam/libcsamtools.o build/temp.linux-riscv64-cpython-315/samtools/amplicon_stats.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/bam.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/bam2depth.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/bam_addrprg.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/bam_ampliconclip.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/bam_aux.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/bam_cat.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/bam_checksum.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/bam_color.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/bam_consensus.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/bam_fastq.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/bam_flags.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/bam_import.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/bam_index.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/bam_lpileup.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/bam_markdup.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/bam_mate.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/bam_md.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/bam_plbuf.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/bam_plcmd.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/bam_quickcheck.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/bam_reheader.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/bam_rmdup.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/bam_rmdupse.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/bam_samples.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/bam_sort.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/bam_split.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/bam_stat.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/bamshuf.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/bamtk.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/bedcov.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/bedidx.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/consensus_pileup.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/coverage.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/cram_size.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/cut_target.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/dict.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/faidx.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/lz4/lz4.o build/temp.linux-riscv64-cpython-315/samtools/padding.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/phase.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/reference.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/reset.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/sam_opts.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/sam_utils.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/sam_view.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/sample.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/samtools.pysam.o build/temp.linux-riscv64-cpython-315/samtools/stats.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/stats_isize.c.pysam.o build/temp.linux-riscv64-cpython-315/samtools/tmp_file.c.pysam.o -L/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -L/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-315-riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-315/pysam/libcsamtools.cpython-315-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcbcftools.pyx because it changed. [1/1] Cythonizing pysam/libcbcftools.pyx building 'pysam.libcbcftools' extension creating build/temp.linux-riscv64-cpython-315/bcftools gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/HMM.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/HMM.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/abuf.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/abuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/bam2bcf.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/bam2bcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/bam2bcf_edlib.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/bam2bcf_edlib.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/bam2bcf_iaux.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/bam2bcf_iaux.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/bam2bcf_indel.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/bam2bcf_indel.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/bam_sample.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/bam_sample.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement bcftools/bam_sample.c.pysam.c: In function ‘bam_smpl_add_bam’: bcftools/bam_sample.c.pysam.c:174:21: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 174 | char *eol = strchr(q + 3, '\n'); | ^~~~~~ gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/bcftools.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/bcftools.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/bin.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/bin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/ccall.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/ccall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/cols.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/cols.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/consensus.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/convert.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/convert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/csq.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/csq.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/dist.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/dist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/edlib.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/edlib.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/em.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/em.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/extsort.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/extsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/filter.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/filter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/gff.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/gff.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/gvcf.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/gvcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/hclust.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/hclust.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/kmin.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/kmin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/main.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/main.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/mcall.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/mcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/mpileup.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/mpileup.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/ploidy.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/ploidy.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/prob1.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/prob1.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/read_consensus.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/read_consensus.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/regidx.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/regidx.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/reheader.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/reheader.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/smpl_ilist.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/smpl_ilist.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/str_finder.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/str_finder.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/tabix.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/tabix.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/tsv2vcf.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/tsv2vcf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/vcfannotate.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/vcfannotate.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/vcfbuf.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/vcfbuf.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/vcfcall.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/vcfcall.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/vcfcnv.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/vcfcnv.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/vcfconcat.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/vcfconcat.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/vcfconvert.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/vcfconvert.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/vcffilter.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/vcffilter.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/vcfgtcheck.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/vcfgtcheck.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/vcfhead.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/vcfhead.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/vcfindex.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/vcfindex.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/vcfisec.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/vcfisec.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/vcfmerge.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/vcfmerge.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/vcfnorm.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/vcfnorm.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/vcfplugin.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/vcfplugin.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/vcfquery.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/vcfquery.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/vcfroh.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/vcfroh.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/vcfsom.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/vcfsom.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/vcfsort.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/vcfsort.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/vcfstats.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/vcfstats.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/vcfview.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/vcfview.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/vcmp.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/vcmp.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c bcftools/version.c.pysam.c -o build/temp.linux-riscv64-cpython-315/bcftools/version.c.pysam.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement bcftools/version.c.pysam.c: In function ‘init_index2’: bcftools/version.c.pysam.c:165:19: warning: initialization discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 165 | char *delim = strstr(fname, HTS_IDX_DELIM); | ^~~~~~ gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c pysam/libcbcftools.c -o build/temp.linux-riscv64-cpython-315/pysam/libcbcftools.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC build/temp.linux-riscv64-cpython-315/bcftools/HMM.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/abuf.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/bam2bcf.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/bam2bcf_edlib.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/bam2bcf_iaux.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/bam2bcf_indel.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/bam_sample.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/bcftools.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/bin.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/ccall.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/cols.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/consensus.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/convert.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/csq.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/dist.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/edlib.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/em.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/extsort.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/filter.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/gff.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/gvcf.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/hclust.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/kmin.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/main.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/mcall.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/mpileup.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/ploidy.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/prob1.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/read_consensus.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/regidx.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/reheader.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/smpl_ilist.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/str_finder.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/tabix.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/tsv2vcf.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/vcfannotate.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/vcfbuf.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/vcfcall.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/vcfcnv.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/vcfconcat.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/vcfconvert.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/vcffilter.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/vcfgtcheck.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/vcfhead.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/vcfindex.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/vcfisec.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/vcfmerge.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/vcfnorm.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/vcfplugin.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/vcfquery.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/vcfroh.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/vcfsom.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/vcfsort.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/vcfstats.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/vcfview.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/vcmp.c.pysam.o build/temp.linux-riscv64-cpython-315/bcftools/version.c.pysam.o build/temp.linux-riscv64-cpython-315/pysam/libcbcftools.o -L/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -L/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-315-riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-315/pysam/libcbcftools.cpython-315-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcutils.pyx because it changed. [1/1] Cythonizing pysam/libcutils.pyx building 'pysam.libcutils' extension gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c pysam/libcutils.c -o build/temp.linux-riscv64-cpython-315/pysam/libcutils.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC build/temp.linux-riscv64-cpython-315/pysam/libcutils.o -L/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -L/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-315-riscv64-linux-gnu -lcsamtools.cpython-315-riscv64-linux-gnu -lcbcftools.cpython-315-riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-315/pysam/libcutils.cpython-315-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcalignmentfile.pyx because it changed. [1/1] Cythonizing pysam/libcalignmentfile.pyx building 'pysam.libcalignmentfile' extension gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c pysam/libcalignmentfile.c -o build/temp.linux-riscv64-cpython-315/pysam/libcalignmentfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC build/temp.linux-riscv64-cpython-315/pysam/libcalignmentfile.o -L/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -L/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-315-riscv64-linux-gnu -lcutils.cpython-315-riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-315/pysam/libcalignmentfile.cpython-315-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcsamfile.pyx because it changed. [1/1] Cythonizing pysam/libcsamfile.pyx building 'pysam.libcsamfile' extension gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c pysam/libcsamfile.c -o build/temp.linux-riscv64-cpython-315/pysam/libcsamfile.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC build/temp.linux-riscv64-cpython-315/pysam/libcsamfile.o -L/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -L/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-315-riscv64-linux-gnu -lcutils.cpython-315-riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-315/pysam/libcsamfile.cpython-315-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcalignedsegment.pyx because it changed. [1/1] Cythonizing pysam/libcalignedsegment.pyx building 'pysam.libcalignedsegment' extension gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c pysam/libcalignedsegment.c -o build/temp.linux-riscv64-cpython-315/pysam/libcalignedsegment.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC build/temp.linux-riscv64-cpython-315/pysam/libcalignedsegment.o -L/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -L/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-315-riscv64-linux-gnu -lcutils.cpython-315-riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-315/pysam/libcalignedsegment.cpython-315-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libctabix.pyx because it changed. [1/1] Cythonizing pysam/libctabix.pyx building 'pysam.libctabix' extension gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c pysam/libctabix.c -o build/temp.linux-riscv64-cpython-315/pysam/libctabix.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC build/temp.linux-riscv64-cpython-315/pysam/libctabix.o -L/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -L/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-315-riscv64-linux-gnu -lcutils.cpython-315-riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-315/pysam/libctabix.cpython-315-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcfaidx.pyx because it changed. [1/1] Cythonizing pysam/libcfaidx.pyx building 'pysam.libcfaidx' extension gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c pysam/libcfaidx.c -o build/temp.linux-riscv64-cpython-315/pysam/libcfaidx.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC build/temp.linux-riscv64-cpython-315/pysam/libcfaidx.o -L/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -L/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-315-riscv64-linux-gnu -lcutils.cpython-315-riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-315/pysam/libcfaidx.cpython-315-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcbcf.pyx because it changed. [1/1] Cythonizing pysam/libcbcf.pyx building 'pysam.libcbcf' extension gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c pysam/libcbcf.c -o build/temp.linux-riscv64-cpython-315/pysam/libcbcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC build/temp.linux-riscv64-cpython-315/pysam/libcbcf.o -L/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -L/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-315-riscv64-linux-gnu -lcutils.cpython-315-riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-315/pysam/libcbcf.cpython-315-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libcbgzf.pyx because it changed. [1/1] Cythonizing pysam/libcbgzf.pyx building 'pysam.libcbgzf' extension gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c pysam/libcbgzf.c -o build/temp.linux-riscv64-cpython-315/pysam/libcbgzf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC build/temp.linux-riscv64-cpython-315/pysam/libcbgzf.o -L/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -L/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-315-riscv64-linux-gnu -lcutils.cpython-315-riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-315/pysam/libcbgzf.cpython-315-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN Compiling pysam/libctabixproxies.pyx because it changed. [1/1] Cythonizing pysam/libctabixproxies.pyx building 'pysam.libctabixproxies' extension gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c pysam/libctabixproxies.c -o build/temp.linux-riscv64-cpython-315/pysam/libctabixproxies.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC build/temp.linux-riscv64-cpython-315/pysam/libctabixproxies.o -L/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -L/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-315-riscv64-linux-gnu -lcutils.cpython-315-riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-315/pysam/libctabixproxies.cpython-315-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN warning: pysam/libcvcf.pyx:1084:27: Unreachable code Compiling pysam/libcvcf.pyx because it changed. [1/1] Cythonizing pysam/libcvcf.pyx building 'pysam.libcvcf' extension gcc -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC -fPIC -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/lz4 -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools -I/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -I/usr/include/python3.15 -c pysam/libcvcf.c -o build/temp.linux-riscv64-cpython-315/pysam/libcvcf.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement pysam/libcvcf.c: In function ‘__pyx_pf_5pysam_7libcvcf_3VCF_32parse_data.isra’: pysam/libcvcf.c:24706:15: warning: ‘__pyx_v_qual’ may be used uninitialized [-Wmaybe-uninitialized] 24706 | __pyx_t_2 = PyFloat_FromDouble(__pyx_v_qual); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 874, __pyx_L1_error) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pysam/libcvcf.c:20386:10: note: ‘__pyx_v_qual’ was declared here 20386 | double __pyx_v_qual; | ^~~~~~~~~~~~ gcc -shared -Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -fPIC build/temp.linux-riscv64-cpython-315/pysam/libcvcf.o -L/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/pysam -L/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -Lbuild/lib.linux-riscv64-cpython-315/pysam -L/usr/lib64 -lz -llzma -lbz2 -lz -lm -lchtslib.cpython-315-riscv64-linux-gnu -lcutils.cpython-315-riscv64-linux-gnu -o build/lib.linux-riscv64-cpython-315/pysam/libcvcf.cpython-315-riscv64-linux-gnu.so -Wl,-rpath,$ORIGIN installing to build/bdist.linux-riscv64/wheel running install running install_lib creating build/bdist.linux-riscv64/wheel creating build/bdist.linux-riscv64/wheel/pysam copying build/lib.linux-riscv64-cpython-315/pysam/Pileup.py -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/__init__.py -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/bcftools.py -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/samtools.py -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/utils.py -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/version.py -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/config.py -> build/bdist.linux-riscv64/wheel/./pysam creating build/bdist.linux-riscv64/wheel/pysam/include copying build/lib.linux-riscv64-cpython-315/pysam/include/__init__.py -> build/bdist.linux-riscv64/wheel/./pysam/include creating build/bdist.linux-riscv64/wheel/pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/LICENSE -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/README -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/amplicon_stats.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/amplicon_stats.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam.h -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam2depth.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam2depth.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_addrprg.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_addrprg.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_ampliconclip.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_ampliconclip.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_ampliconclip.h -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_aux.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_aux.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_cat.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_cat.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_checksum.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_checksum.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_color.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_color.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_consensus.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_consensus.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_consensus_tab.h -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_fastq.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_fastq.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_flags.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_flags.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_import.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_import.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_index.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_index.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_lpileup.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_lpileup.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_lpileup.h -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_markdup.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_markdup.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_mate.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_mate.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_md.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_md.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_plbuf.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_plbuf.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_plbuf.h -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_plcmd.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_plcmd.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_quickcheck.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_quickcheck.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_reheader.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_reheader.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_rmdup.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_rmdup.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_rmdupse.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_rmdupse.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_samples.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_samples.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_sort.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_sort.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_split.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_split.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_stat.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bam_stat.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bamshuf.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bamshuf.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bamtk.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bamtk.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bedcov.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bedcov.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bedidx.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bedidx.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/bedidx.h -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/consensus_pileup.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/consensus_pileup.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/consensus_pileup.h -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/coverage.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/coverage.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/cram_size.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/cram_size.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/cut_target.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/cut_target.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/dict.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/dict.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/faidx.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/faidx.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/padding.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/padding.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/phase.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/phase.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/reference.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/reference.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/reset.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/reset.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/sam_opts.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/sam_opts.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/sam_opts.h -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/sam_utils.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/sam_utils.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/sam_utils.h -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/sam_view.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/sam_view.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/sample.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/sample.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/sample.h -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/samtools.h -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/samtools.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/samtools.pysam.h -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/splaysort.h -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/stats.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/stats.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/stats_isize.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/stats_isize.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/stats_isize.h -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/tmp_file.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/tmp_file.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/tmp_file.h -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/version.sh -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools creating build/bdist.linux-riscv64/wheel/pysam/include/samtools/lz4 copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/lz4/LICENSE -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools/lz4 copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/lz4/lz4.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools/lz4 copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/lz4/lz4.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools/lz4 copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/lz4/lz4.h -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools/lz4 copying build/lib.linux-riscv64-cpython-315/pysam/include/samtools/config.h -> build/bdist.linux-riscv64/wheel/./pysam/include/samtools creating build/bdist.linux-riscv64/wheel/pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/HMM.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/HMM.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/HMM.h -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/LICENSE -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/README -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/abuf.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/abuf.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/abuf.h -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/bam2bcf.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/bam2bcf.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/bam2bcf.h -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/bam2bcf_edlib.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/bam2bcf_edlib.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/bam2bcf_iaux.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/bam2bcf_iaux.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/bam2bcf_indel.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/bam2bcf_indel.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/bam_sample.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/bam_sample.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/bam_sample.h -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/bcftools.h -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/bcftools.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/bcftools.pysam.h -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/bin.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/bin.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/bin.h -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/call.h -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/ccall.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/ccall.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/cigar_state.h -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/cols.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/cols.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/cols.h -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/consensus.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/consensus.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/convert.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/convert.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/convert.h -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/csq.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/csq.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/dbuf.h -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/dist.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/dist.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/dist.h -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/edlib.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/edlib.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/edlib.h -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/em.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/em.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/extsort.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/extsort.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/extsort.h -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/filter.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/filter.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/filter.h -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/gff.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/gff.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/gff.h -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/gvcf.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/gvcf.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/gvcf.h -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/hclust.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/hclust.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/hclust.h -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/hex.h -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/khash_str2str.h -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/kheap.h -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/kmin.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/kmin.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/kmin.h -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/main.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/main.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/mcall.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/mcall.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/mpileup.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/mpileup.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/mw.h -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/ploidy.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/ploidy.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/ploidy.h -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/prob1.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/prob1.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/prob1.h -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/rbuf.h -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/read_consensus.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/read_consensus.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/read_consensus.h -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/regidx.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/regidx.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/regidx.h -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/reheader.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/reheader.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/smpl_ilist.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/smpl_ilist.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/smpl_ilist.h -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/str_finder.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/str_finder.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/str_finder.h -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/tabix.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/tabix.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/tsv2vcf.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/tsv2vcf.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/tsv2vcf.h -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/utlist.h -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/variantkey.h -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcfannotate.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcfannotate.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcfbuf.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcfbuf.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcfbuf.h -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcfcall.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcfcall.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcfcnv.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcfcnv.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcfconcat.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcfconcat.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcfconvert.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcfconvert.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcffilter.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcffilter.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcfgtcheck.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcfgtcheck.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcfhead.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcfhead.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcfindex.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcfindex.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcfisec.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcfisec.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcfmerge.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcfmerge.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcfnorm.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcfnorm.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcfplugin.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcfplugin.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcfquery.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcfquery.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcfroh.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcfroh.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcfsom.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcfsom.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcfsort.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcfsort.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcfstats.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcfstats.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcfview.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcfview.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcmp.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcmp.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/vcmp.h -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/version.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/version.c.pysam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/version.sh -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools copying build/lib.linux-riscv64-cpython-315/pysam/include/bcftools/config.h -> build/bdist.linux-riscv64/wheel/./pysam/include/bcftools creating build/bdist.linux-riscv64/wheel/pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/LICENSE -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/Makefile -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/README -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/bcf_sr_sort.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/bcf_sr_sort.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/bgzf.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/bgzf_internal.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/builddir_vars.mk.in -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/config.guess -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/config.h.in -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/config.mk.in -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/config.sub -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/configure -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/configure.ac -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/errmod.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/faidx.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/fuzz_settings.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/header.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/header.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/hfile.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/hfile_gcs.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/hfile_internal.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/hfile_libcurl.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/hfile_s3.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/hts.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/hts_expr.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/hts_internal.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/hts_os.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/hts_time_funcs.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs_bundled.mk -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs_external.mk -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib.mk -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib.pc.in -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib_vars.mk -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/kfunc.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/kstring.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/md5.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/multipart.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/plugin.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/probaln.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/realn.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/regidx.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/region.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/sam.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/sam_internal.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/sam_mods.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/simd.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/synced_bcf_reader.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/tbx.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/textutils.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/textutils_internal.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/thread_pool.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/thread_pool_internal.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/vcf.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/vcf_sweep.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/vcfutils.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/version.sh -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib creating build/bdist.linux-riscv64/wheel/pysam/include/htslib/cram copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram/cram.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/cram copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram/cram_codecs.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/cram copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram/cram_codecs.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/cram copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram/cram_decode.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/cram copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram/cram_decode.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/cram copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram/cram_encode.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/cram copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram/cram_encode.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/cram copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram/cram_external.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/cram copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram/cram_index.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/cram copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram/cram_index.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/cram copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram/cram_io.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/cram copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram/cram_io.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/cram copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram/cram_samtools.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/cram copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram/cram_stats.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/cram copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram/cram_stats.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/cram copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram/cram_structs.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/cram copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram/mFILE.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/cram copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram/mFILE.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/cram copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram/misc.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/cram copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram/open_trace_file.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/cram copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram/open_trace_file.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/cram copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram/os.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/cram copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram/pooled_alloc.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/cram copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram/pooled_alloc.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/cram copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram/string_alloc.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/cram copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/cram/string_alloc.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/cram creating build/bdist.linux-riscv64/wheel/pysam/include/htslib/htscodecs creating build/bdist.linux-riscv64/wheel/pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs/arith_dynamic.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs/arith_dynamic.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs/c_range_coder.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs/c_simple_model.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs/fqzcomp_qual.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs/fqzcomp_qual.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs/htscodecs.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs/htscodecs.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs/htscodecs_endian.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs/pack.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs/pack.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs/permute.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs/pooled_alloc.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs/rANS_byte.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs/rANS_static.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs/rANS_static.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs/rANS_static16_int.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_neon.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs/rANS_static4x16.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs/rANS_static4x16pr.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs/rANS_word.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs/rle.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs/rle.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs/tokenise_name3.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs/tokenise_name3.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs/utils.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs/utils.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs/varint.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs/varint2.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htscodecs/htscodecs copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htscodecs/htscodecs/version.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htscodecs/htscodecs creating build/bdist.linux-riscv64/wheel/pysam/include/htslib/m4 copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/m4/hts_check_compile_flags_needed.m4 -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/m4 copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/m4/hts_hide_dynamic_syms.m4 -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/m4 copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/m4/hts_prog_cc_warnings.m4 -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/m4 copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/m4/pkg.m4 -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/m4 creating build/bdist.linux-riscv64/wheel/pysam/include/htslib/os copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/os/lzma_stub.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/os copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/os/rand.c -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/os copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/config.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib creating build/bdist.linux-riscv64/wheel/pysam/include/htslib/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib/bgzf.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib/cram.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib/faidx.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib/hfile.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib/hts.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib/hts_defs.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib/hts_endian.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib/hts_expr.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib/hts_log.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib/hts_os.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib/kbitset.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib/kfunc.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib/khash.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib/khash_str2int.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib/klist.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib/knetfile.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib/kroundup.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib/kseq.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib/ksort.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib/kstring.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib/regidx.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib/sam.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib/synced_bcf_reader.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib/tbx.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib/thread_pool.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib/vcf.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib/vcf_sweep.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htslib copying build/lib.linux-riscv64-cpython-315/pysam/include/htslib/htslib/vcfutils.h -> build/bdist.linux-riscv64/wheel/./pysam/include/htslib/htslib copying build/lib.linux-riscv64-cpython-315/pysam/conftest_cstd.c -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/htslib_util.c -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/htslib_util.h -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libcalignedsegment.pxd -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libcalignedsegment.pyi -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libcalignedsegment.pyx -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libcalignmentfile.pxd -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libcalignmentfile.pyi -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libcalignmentfile.pyx -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libcbcf.pxd -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libcbcf.pyi -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libcbcf.pyx -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libcbcftools.pxd -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libcbcftools.pyi -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libcbcftools.pyx -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libcbgzf.pxd -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libcbgzf.pyi -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libcbgzf.pyx -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libcfaidx.pxd -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libcfaidx.pyi -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libcfaidx.pyx -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libchtslib.pxd -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libchtslib.pyi -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libchtslib.pyx -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libcsamfile.pxd -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libcsamfile.pyi -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libcsamfile.pyx -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libcsamtools.pxd -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libcsamtools.pyi -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libcsamtools.pyx -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libctabix.pxd -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libctabix.pyi -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libctabix.pyx -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libctabixproxies.pxd -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libctabixproxies.pyi -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libctabixproxies.pyx -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libcutils.pxd -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libcutils.pyi -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libcutils.pyx -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libcvcf.pxd -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libcvcf.pyi -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libcvcf.pyx -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/py.typed -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/version.h -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/version.pyi -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libchtslib.cpython-315-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libcsamtools.cpython-315-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libcbcftools.cpython-315-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libcutils.cpython-315-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libcalignmentfile.cpython-315-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libcsamfile.cpython-315-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libcalignedsegment.cpython-315-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libctabix.cpython-315-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libcfaidx.cpython-315-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libcbcf.cpython-315-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libcbgzf.cpython-315-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libctabixproxies.cpython-315-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./pysam copying build/lib.linux-riscv64-cpython-315/pysam/libcvcf.cpython-315-riscv64-linux-gnu.so -> build/bdist.linux-riscv64/wheel/./pysam running install_egg_info Copying pysam.egg-info to build/bdist.linux-riscv64/wheel/./pysam-0.24.0-py3.15.egg-info running install_scripts creating build/bdist.linux-riscv64/wheel/pysam-0.24.0.dist-info/WHEEL creating '/builddir/.cache/pip/wheels/2a/fa/fc/83fb2d93fa97df63a0dc933ad58b36b77415391e4ed590bda9/tmpon1tmpx_/.tmp-972xpt0y/pysam-0.24.0-cp315-cp315-linux_riscv64.whl' and adding 'build/bdist.linux-riscv64/wheel' to it adding 'pysam/Pileup.py' adding 'pysam/__init__.py' adding 'pysam/bcftools.py' adding 'pysam/config.py' adding 'pysam/conftest_cstd.c' adding 'pysam/htslib_util.c' adding 'pysam/htslib_util.h' adding 'pysam/libcalignedsegment.cpython-315-riscv64-linux-gnu.so' adding 'pysam/libcalignedsegment.pxd' adding 'pysam/libcalignedsegment.pyi' adding 'pysam/libcalignedsegment.pyx' adding 'pysam/libcalignmentfile.cpython-315-riscv64-linux-gnu.so' adding 'pysam/libcalignmentfile.pxd' adding 'pysam/libcalignmentfile.pyi' adding 'pysam/libcalignmentfile.pyx' adding 'pysam/libcbcf.cpython-315-riscv64-linux-gnu.so' adding 'pysam/libcbcf.pxd' adding 'pysam/libcbcf.pyi' adding 'pysam/libcbcf.pyx' adding 'pysam/libcbcftools.cpython-315-riscv64-linux-gnu.so' adding 'pysam/libcbcftools.pxd' adding 'pysam/libcbcftools.pyi' adding 'pysam/libcbcftools.pyx' adding 'pysam/libcbgzf.cpython-315-riscv64-linux-gnu.so' adding 'pysam/libcbgzf.pxd' adding 'pysam/libcbgzf.pyi' adding 'pysam/libcbgzf.pyx' adding 'pysam/libcfaidx.cpython-315-riscv64-linux-gnu.so' adding 'pysam/libcfaidx.pxd' adding 'pysam/libcfaidx.pyi' adding 'pysam/libcfaidx.pyx' adding 'pysam/libchtslib.cpython-315-riscv64-linux-gnu.so' adding 'pysam/libchtslib.pxd' adding 'pysam/libchtslib.pyi' adding 'pysam/libchtslib.pyx' adding 'pysam/libcsamfile.cpython-315-riscv64-linux-gnu.so' adding 'pysam/libcsamfile.pxd' adding 'pysam/libcsamfile.pyi' adding 'pysam/libcsamfile.pyx' adding 'pysam/libcsamtools.cpython-315-riscv64-linux-gnu.so' adding 'pysam/libcsamtools.pxd' adding 'pysam/libcsamtools.pyi' adding 'pysam/libcsamtools.pyx' adding 'pysam/libctabix.cpython-315-riscv64-linux-gnu.so' adding 'pysam/libctabix.pxd' adding 'pysam/libctabix.pyi' adding 'pysam/libctabix.pyx' adding 'pysam/libctabixproxies.cpython-315-riscv64-linux-gnu.so' adding 'pysam/libctabixproxies.pxd' adding 'pysam/libctabixproxies.pyi' adding 'pysam/libctabixproxies.pyx' adding 'pysam/libcutils.cpython-315-riscv64-linux-gnu.so' adding 'pysam/libcutils.pxd' adding 'pysam/libcutils.pyi' adding 'pysam/libcutils.pyx' adding 'pysam/libcvcf.cpython-315-riscv64-linux-gnu.so' adding 'pysam/libcvcf.pxd' adding 'pysam/libcvcf.pyi' adding 'pysam/libcvcf.pyx' adding 'pysam/py.typed' adding 'pysam/samtools.py' adding 'pysam/utils.py' adding 'pysam/version.h' adding 'pysam/version.py' adding 'pysam/version.pyi' adding 'pysam/include/__init__.py' adding 'pysam/include/bcftools/HMM.c' adding 'pysam/include/bcftools/HMM.c.pysam.c' adding 'pysam/include/bcftools/HMM.h' adding 'pysam/include/bcftools/LICENSE' adding 'pysam/include/bcftools/README' adding 'pysam/include/bcftools/abuf.c' adding 'pysam/include/bcftools/abuf.c.pysam.c' adding 'pysam/include/bcftools/abuf.h' adding 'pysam/include/bcftools/bam2bcf.c' adding 'pysam/include/bcftools/bam2bcf.c.pysam.c' adding 'pysam/include/bcftools/bam2bcf.h' adding 'pysam/include/bcftools/bam2bcf_edlib.c' adding 'pysam/include/bcftools/bam2bcf_edlib.c.pysam.c' adding 'pysam/include/bcftools/bam2bcf_iaux.c' adding 'pysam/include/bcftools/bam2bcf_iaux.c.pysam.c' adding 'pysam/include/bcftools/bam2bcf_indel.c' adding 'pysam/include/bcftools/bam2bcf_indel.c.pysam.c' adding 'pysam/include/bcftools/bam_sample.c' adding 'pysam/include/bcftools/bam_sample.c.pysam.c' adding 'pysam/include/bcftools/bam_sample.h' adding 'pysam/include/bcftools/bcftools.h' adding 'pysam/include/bcftools/bcftools.pysam.c' adding 'pysam/include/bcftools/bcftools.pysam.h' adding 'pysam/include/bcftools/bin.c' adding 'pysam/include/bcftools/bin.c.pysam.c' adding 'pysam/include/bcftools/bin.h' adding 'pysam/include/bcftools/call.h' adding 'pysam/include/bcftools/ccall.c' adding 'pysam/include/bcftools/ccall.c.pysam.c' adding 'pysam/include/bcftools/cigar_state.h' adding 'pysam/include/bcftools/cols.c' adding 'pysam/include/bcftools/cols.c.pysam.c' adding 'pysam/include/bcftools/cols.h' adding 'pysam/include/bcftools/config.h' adding 'pysam/include/bcftools/consensus.c' adding 'pysam/include/bcftools/consensus.c.pysam.c' adding 'pysam/include/bcftools/convert.c' adding 'pysam/include/bcftools/convert.c.pysam.c' adding 'pysam/include/bcftools/convert.h' adding 'pysam/include/bcftools/csq.c' adding 'pysam/include/bcftools/csq.c.pysam.c' adding 'pysam/include/bcftools/dbuf.h' adding 'pysam/include/bcftools/dist.c' adding 'pysam/include/bcftools/dist.c.pysam.c' adding 'pysam/include/bcftools/dist.h' adding 'pysam/include/bcftools/edlib.c' adding 'pysam/include/bcftools/edlib.c.pysam.c' adding 'pysam/include/bcftools/edlib.h' adding 'pysam/include/bcftools/em.c' adding 'pysam/include/bcftools/em.c.pysam.c' adding 'pysam/include/bcftools/extsort.c' adding 'pysam/include/bcftools/extsort.c.pysam.c' adding 'pysam/include/bcftools/extsort.h' adding 'pysam/include/bcftools/filter.c' adding 'pysam/include/bcftools/filter.c.pysam.c' adding 'pysam/include/bcftools/filter.h' adding 'pysam/include/bcftools/gff.c' adding 'pysam/include/bcftools/gff.c.pysam.c' adding 'pysam/include/bcftools/gff.h' adding 'pysam/include/bcftools/gvcf.c' adding 'pysam/include/bcftools/gvcf.c.pysam.c' adding 'pysam/include/bcftools/gvcf.h' adding 'pysam/include/bcftools/hclust.c' adding 'pysam/include/bcftools/hclust.c.pysam.c' adding 'pysam/include/bcftools/hclust.h' adding 'pysam/include/bcftools/hex.h' adding 'pysam/include/bcftools/khash_str2str.h' adding 'pysam/include/bcftools/kheap.h' adding 'pysam/include/bcftools/kmin.c' adding 'pysam/include/bcftools/kmin.c.pysam.c' adding 'pysam/include/bcftools/kmin.h' adding 'pysam/include/bcftools/main.c' adding 'pysam/include/bcftools/main.c.pysam.c' adding 'pysam/include/bcftools/mcall.c' adding 'pysam/include/bcftools/mcall.c.pysam.c' adding 'pysam/include/bcftools/mpileup.c' adding 'pysam/include/bcftools/mpileup.c.pysam.c' adding 'pysam/include/bcftools/mw.h' adding 'pysam/include/bcftools/ploidy.c' adding 'pysam/include/bcftools/ploidy.c.pysam.c' adding 'pysam/include/bcftools/ploidy.h' adding 'pysam/include/bcftools/prob1.c' adding 'pysam/include/bcftools/prob1.c.pysam.c' adding 'pysam/include/bcftools/prob1.h' adding 'pysam/include/bcftools/rbuf.h' adding 'pysam/include/bcftools/read_consensus.c' adding 'pysam/include/bcftools/read_consensus.c.pysam.c' adding 'pysam/include/bcftools/read_consensus.h' adding 'pysam/include/bcftools/regidx.c' adding 'pysam/include/bcftools/regidx.c.pysam.c' adding 'pysam/include/bcftools/regidx.h' adding 'pysam/include/bcftools/reheader.c' adding 'pysam/include/bcftools/reheader.c.pysam.c' adding 'pysam/include/bcftools/smpl_ilist.c' adding 'pysam/include/bcftools/smpl_ilist.c.pysam.c' adding 'pysam/include/bcftools/smpl_ilist.h' adding 'pysam/include/bcftools/str_finder.c' adding 'pysam/include/bcftools/str_finder.c.pysam.c' adding 'pysam/include/bcftools/str_finder.h' adding 'pysam/include/bcftools/tabix.c' adding 'pysam/include/bcftools/tabix.c.pysam.c' adding 'pysam/include/bcftools/tsv2vcf.c' adding 'pysam/include/bcftools/tsv2vcf.c.pysam.c' adding 'pysam/include/bcftools/tsv2vcf.h' adding 'pysam/include/bcftools/utlist.h' adding 'pysam/include/bcftools/variantkey.h' adding 'pysam/include/bcftools/vcfannotate.c' adding 'pysam/include/bcftools/vcfannotate.c.pysam.c' adding 'pysam/include/bcftools/vcfbuf.c' adding 'pysam/include/bcftools/vcfbuf.c.pysam.c' adding 'pysam/include/bcftools/vcfbuf.h' adding 'pysam/include/bcftools/vcfcall.c' adding 'pysam/include/bcftools/vcfcall.c.pysam.c' adding 'pysam/include/bcftools/vcfcnv.c' adding 'pysam/include/bcftools/vcfcnv.c.pysam.c' adding 'pysam/include/bcftools/vcfconcat.c' adding 'pysam/include/bcftools/vcfconcat.c.pysam.c' adding 'pysam/include/bcftools/vcfconvert.c' adding 'pysam/include/bcftools/vcfconvert.c.pysam.c' adding 'pysam/include/bcftools/vcffilter.c' adding 'pysam/include/bcftools/vcffilter.c.pysam.c' adding 'pysam/include/bcftools/vcfgtcheck.c' adding 'pysam/include/bcftools/vcfgtcheck.c.pysam.c' adding 'pysam/include/bcftools/vcfhead.c' adding 'pysam/include/bcftools/vcfhead.c.pysam.c' adding 'pysam/include/bcftools/vcfindex.c' adding 'pysam/include/bcftools/vcfindex.c.pysam.c' adding 'pysam/include/bcftools/vcfisec.c' adding 'pysam/include/bcftools/vcfisec.c.pysam.c' adding 'pysam/include/bcftools/vcfmerge.c' adding 'pysam/include/bcftools/vcfmerge.c.pysam.c' adding 'pysam/include/bcftools/vcfnorm.c' adding 'pysam/include/bcftools/vcfnorm.c.pysam.c' adding 'pysam/include/bcftools/vcfplugin.c' adding 'pysam/include/bcftools/vcfplugin.c.pysam.c' adding 'pysam/include/bcftools/vcfquery.c' adding 'pysam/include/bcftools/vcfquery.c.pysam.c' adding 'pysam/include/bcftools/vcfroh.c' adding 'pysam/include/bcftools/vcfroh.c.pysam.c' adding 'pysam/include/bcftools/vcfsom.c' adding 'pysam/include/bcftools/vcfsom.c.pysam.c' adding 'pysam/include/bcftools/vcfsort.c' adding 'pysam/include/bcftools/vcfsort.c.pysam.c' adding 'pysam/include/bcftools/vcfstats.c' adding 'pysam/include/bcftools/vcfstats.c.pysam.c' adding 'pysam/include/bcftools/vcfview.c' adding 'pysam/include/bcftools/vcfview.c.pysam.c' adding 'pysam/include/bcftools/vcmp.c' adding 'pysam/include/bcftools/vcmp.c.pysam.c' adding 'pysam/include/bcftools/vcmp.h' adding 'pysam/include/bcftools/version.c' adding 'pysam/include/bcftools/version.c.pysam.c' adding 'pysam/include/bcftools/version.sh' adding 'pysam/include/htslib/LICENSE' adding 'pysam/include/htslib/Makefile' adding 'pysam/include/htslib/README' adding 'pysam/include/htslib/bcf_sr_sort.c' adding 'pysam/include/htslib/bcf_sr_sort.h' adding 'pysam/include/htslib/bgzf.c' adding 'pysam/include/htslib/bgzf_internal.h' adding 'pysam/include/htslib/builddir_vars.mk.in' adding 'pysam/include/htslib/config.guess' adding 'pysam/include/htslib/config.h' adding 'pysam/include/htslib/config.h.in' adding 'pysam/include/htslib/config.mk.in' adding 'pysam/include/htslib/config.sub' adding 'pysam/include/htslib/configure' adding 'pysam/include/htslib/configure.ac' adding 'pysam/include/htslib/errmod.c' adding 'pysam/include/htslib/faidx.c' adding 'pysam/include/htslib/fuzz_settings.h' adding 'pysam/include/htslib/header.c' adding 'pysam/include/htslib/header.h' adding 'pysam/include/htslib/hfile.c' adding 'pysam/include/htslib/hfile_gcs.c' adding 'pysam/include/htslib/hfile_internal.h' adding 'pysam/include/htslib/hfile_libcurl.c' adding 'pysam/include/htslib/hfile_s3.c' adding 'pysam/include/htslib/hts.c' adding 'pysam/include/htslib/hts_expr.c' adding 'pysam/include/htslib/hts_internal.h' adding 'pysam/include/htslib/hts_os.c' adding 'pysam/include/htslib/hts_time_funcs.h' adding 'pysam/include/htslib/htscodecs_bundled.mk' adding 'pysam/include/htslib/htscodecs_external.mk' adding 'pysam/include/htslib/htslib.mk' adding 'pysam/include/htslib/htslib.pc.in' adding 'pysam/include/htslib/htslib_vars.mk' adding 'pysam/include/htslib/kfunc.c' adding 'pysam/include/htslib/kstring.c' adding 'pysam/include/htslib/md5.c' adding 'pysam/include/htslib/multipart.c' adding 'pysam/include/htslib/plugin.c' adding 'pysam/include/htslib/probaln.c' adding 'pysam/include/htslib/realn.c' adding 'pysam/include/htslib/regidx.c' adding 'pysam/include/htslib/region.c' adding 'pysam/include/htslib/sam.c' adding 'pysam/include/htslib/sam_internal.h' adding 'pysam/include/htslib/sam_mods.c' adding 'pysam/include/htslib/simd.c' adding 'pysam/include/htslib/synced_bcf_reader.c' adding 'pysam/include/htslib/tbx.c' adding 'pysam/include/htslib/textutils.c' adding 'pysam/include/htslib/textutils_internal.h' adding 'pysam/include/htslib/thread_pool.c' adding 'pysam/include/htslib/thread_pool_internal.h' adding 'pysam/include/htslib/vcf.c' adding 'pysam/include/htslib/vcf_sweep.c' adding 'pysam/include/htslib/vcfutils.c' adding 'pysam/include/htslib/version.sh' adding 'pysam/include/htslib/cram/cram.h' adding 'pysam/include/htslib/cram/cram_codecs.c' adding 'pysam/include/htslib/cram/cram_codecs.h' adding 'pysam/include/htslib/cram/cram_decode.c' adding 'pysam/include/htslib/cram/cram_decode.h' adding 'pysam/include/htslib/cram/cram_encode.c' adding 'pysam/include/htslib/cram/cram_encode.h' adding 'pysam/include/htslib/cram/cram_external.c' adding 'pysam/include/htslib/cram/cram_index.c' adding 'pysam/include/htslib/cram/cram_index.h' adding 'pysam/include/htslib/cram/cram_io.c' adding 'pysam/include/htslib/cram/cram_io.h' adding 'pysam/include/htslib/cram/cram_samtools.h' adding 'pysam/include/htslib/cram/cram_stats.c' adding 'pysam/include/htslib/cram/cram_stats.h' adding 'pysam/include/htslib/cram/cram_structs.h' adding 'pysam/include/htslib/cram/mFILE.c' adding 'pysam/include/htslib/cram/mFILE.h' adding 'pysam/include/htslib/cram/misc.h' adding 'pysam/include/htslib/cram/open_trace_file.c' adding 'pysam/include/htslib/cram/open_trace_file.h' adding 'pysam/include/htslib/cram/os.h' adding 'pysam/include/htslib/cram/pooled_alloc.c' adding 'pysam/include/htslib/cram/pooled_alloc.h' adding 'pysam/include/htslib/cram/string_alloc.c' adding 'pysam/include/htslib/cram/string_alloc.h' adding 'pysam/include/htslib/htscodecs/htscodecs/arith_dynamic.c' adding 'pysam/include/htslib/htscodecs/htscodecs/arith_dynamic.h' adding 'pysam/include/htslib/htscodecs/htscodecs/c_range_coder.h' adding 'pysam/include/htslib/htscodecs/htscodecs/c_simple_model.h' adding 'pysam/include/htslib/htscodecs/htscodecs/fqzcomp_qual.c' adding 'pysam/include/htslib/htscodecs/htscodecs/fqzcomp_qual.h' adding 'pysam/include/htslib/htscodecs/htscodecs/htscodecs.c' adding 'pysam/include/htslib/htscodecs/htscodecs/htscodecs.h' adding 'pysam/include/htslib/htscodecs/htscodecs/htscodecs_endian.h' adding 'pysam/include/htslib/htscodecs/htscodecs/pack.c' adding 'pysam/include/htslib/htscodecs/htscodecs/pack.h' adding 'pysam/include/htslib/htscodecs/htscodecs/permute.h' adding 'pysam/include/htslib/htscodecs/htscodecs/pooled_alloc.h' adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_byte.h' adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static.c' adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static.h' adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static16_int.h' adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr.c' adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr.h' adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx2.c' adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_avx512.c' adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_neon.c' adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static32x16pr_sse4.c' adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static4x16.h' adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_static4x16pr.c' adding 'pysam/include/htslib/htscodecs/htscodecs/rANS_word.h' adding 'pysam/include/htslib/htscodecs/htscodecs/rle.c' adding 'pysam/include/htslib/htscodecs/htscodecs/rle.h' adding 'pysam/include/htslib/htscodecs/htscodecs/tokenise_name3.c' adding 'pysam/include/htslib/htscodecs/htscodecs/tokenise_name3.h' adding 'pysam/include/htslib/htscodecs/htscodecs/utils.c' adding 'pysam/include/htslib/htscodecs/htscodecs/utils.h' adding 'pysam/include/htslib/htscodecs/htscodecs/varint.h' adding 'pysam/include/htslib/htscodecs/htscodecs/varint2.h' adding 'pysam/include/htslib/htscodecs/htscodecs/version.h' adding 'pysam/include/htslib/htslib/bgzf.h' adding 'pysam/include/htslib/htslib/cram.h' adding 'pysam/include/htslib/htslib/faidx.h' adding 'pysam/include/htslib/htslib/hfile.h' adding 'pysam/include/htslib/htslib/hts.h' adding 'pysam/include/htslib/htslib/hts_defs.h' adding 'pysam/include/htslib/htslib/hts_endian.h' adding 'pysam/include/htslib/htslib/hts_expr.h' adding 'pysam/include/htslib/htslib/hts_log.h' adding 'pysam/include/htslib/htslib/hts_os.h' adding 'pysam/include/htslib/htslib/kbitset.h' adding 'pysam/include/htslib/htslib/kfunc.h' adding 'pysam/include/htslib/htslib/khash.h' adding 'pysam/include/htslib/htslib/khash_str2int.h' adding 'pysam/include/htslib/htslib/klist.h' adding 'pysam/include/htslib/htslib/knetfile.h' adding 'pysam/include/htslib/htslib/kroundup.h' adding 'pysam/include/htslib/htslib/kseq.h' adding 'pysam/include/htslib/htslib/ksort.h' adding 'pysam/include/htslib/htslib/kstring.h' adding 'pysam/include/htslib/htslib/regidx.h' adding 'pysam/include/htslib/htslib/sam.h' adding 'pysam/include/htslib/htslib/synced_bcf_reader.h' adding 'pysam/include/htslib/htslib/tbx.h' adding 'pysam/include/htslib/htslib/thread_pool.h' adding 'pysam/include/htslib/htslib/vcf.h' adding 'pysam/include/htslib/htslib/vcf_sweep.h' adding 'pysam/include/htslib/htslib/vcfutils.h' adding 'pysam/include/htslib/m4/hts_check_compile_flags_needed.m4' adding 'pysam/include/htslib/m4/hts_hide_dynamic_syms.m4' adding 'pysam/include/htslib/m4/hts_prog_cc_warnings.m4' adding 'pysam/include/htslib/m4/pkg.m4' adding 'pysam/include/htslib/os/lzma_stub.h' adding 'pysam/include/htslib/os/rand.c' adding 'pysam/include/samtools/LICENSE' adding 'pysam/include/samtools/README' adding 'pysam/include/samtools/amplicon_stats.c' adding 'pysam/include/samtools/amplicon_stats.c.pysam.c' adding 'pysam/include/samtools/bam.c' adding 'pysam/include/samtools/bam.c.pysam.c' adding 'pysam/include/samtools/bam.h' adding 'pysam/include/samtools/bam2depth.c' adding 'pysam/include/samtools/bam2depth.c.pysam.c' adding 'pysam/include/samtools/bam_addrprg.c' adding 'pysam/include/samtools/bam_addrprg.c.pysam.c' adding 'pysam/include/samtools/bam_ampliconclip.c' adding 'pysam/include/samtools/bam_ampliconclip.c.pysam.c' adding 'pysam/include/samtools/bam_ampliconclip.h' adding 'pysam/include/samtools/bam_aux.c' adding 'pysam/include/samtools/bam_aux.c.pysam.c' adding 'pysam/include/samtools/bam_cat.c' adding 'pysam/include/samtools/bam_cat.c.pysam.c' adding 'pysam/include/samtools/bam_checksum.c' adding 'pysam/include/samtools/bam_checksum.c.pysam.c' adding 'pysam/include/samtools/bam_color.c' adding 'pysam/include/samtools/bam_color.c.pysam.c' adding 'pysam/include/samtools/bam_consensus.c' adding 'pysam/include/samtools/bam_consensus.c.pysam.c' adding 'pysam/include/samtools/bam_consensus_tab.h' adding 'pysam/include/samtools/bam_fastq.c' adding 'pysam/include/samtools/bam_fastq.c.pysam.c' adding 'pysam/include/samtools/bam_flags.c' adding 'pysam/include/samtools/bam_flags.c.pysam.c' adding 'pysam/include/samtools/bam_import.c' adding 'pysam/include/samtools/bam_import.c.pysam.c' adding 'pysam/include/samtools/bam_index.c' adding 'pysam/include/samtools/bam_index.c.pysam.c' adding 'pysam/include/samtools/bam_lpileup.c' adding 'pysam/include/samtools/bam_lpileup.c.pysam.c' adding 'pysam/include/samtools/bam_lpileup.h' adding 'pysam/include/samtools/bam_markdup.c' adding 'pysam/include/samtools/bam_markdup.c.pysam.c' adding 'pysam/include/samtools/bam_mate.c' adding 'pysam/include/samtools/bam_mate.c.pysam.c' adding 'pysam/include/samtools/bam_md.c' adding 'pysam/include/samtools/bam_md.c.pysam.c' adding 'pysam/include/samtools/bam_plbuf.c' adding 'pysam/include/samtools/bam_plbuf.c.pysam.c' adding 'pysam/include/samtools/bam_plbuf.h' adding 'pysam/include/samtools/bam_plcmd.c' adding 'pysam/include/samtools/bam_plcmd.c.pysam.c' adding 'pysam/include/samtools/bam_quickcheck.c' adding 'pysam/include/samtools/bam_quickcheck.c.pysam.c' adding 'pysam/include/samtools/bam_reheader.c' adding 'pysam/include/samtools/bam_reheader.c.pysam.c' adding 'pysam/include/samtools/bam_rmdup.c' adding 'pysam/include/samtools/bam_rmdup.c.pysam.c' adding 'pysam/include/samtools/bam_rmdupse.c' adding 'pysam/include/samtools/bam_rmdupse.c.pysam.c' adding 'pysam/include/samtools/bam_samples.c' adding 'pysam/include/samtools/bam_samples.c.pysam.c' adding 'pysam/include/samtools/bam_sort.c' adding 'pysam/include/samtools/bam_sort.c.pysam.c' adding 'pysam/include/samtools/bam_split.c' adding 'pysam/include/samtools/bam_split.c.pysam.c' adding 'pysam/include/samtools/bam_stat.c' adding 'pysam/include/samtools/bam_stat.c.pysam.c' adding 'pysam/include/samtools/bamshuf.c' adding 'pysam/include/samtools/bamshuf.c.pysam.c' adding 'pysam/include/samtools/bamtk.c' adding 'pysam/include/samtools/bamtk.c.pysam.c' adding 'pysam/include/samtools/bedcov.c' adding 'pysam/include/samtools/bedcov.c.pysam.c' adding 'pysam/include/samtools/bedidx.c' adding 'pysam/include/samtools/bedidx.c.pysam.c' adding 'pysam/include/samtools/bedidx.h' adding 'pysam/include/samtools/config.h' adding 'pysam/include/samtools/consensus_pileup.c' adding 'pysam/include/samtools/consensus_pileup.c.pysam.c' adding 'pysam/include/samtools/consensus_pileup.h' adding 'pysam/include/samtools/coverage.c' adding 'pysam/include/samtools/coverage.c.pysam.c' adding 'pysam/include/samtools/cram_size.c' adding 'pysam/include/samtools/cram_size.c.pysam.c' adding 'pysam/include/samtools/cut_target.c' adding 'pysam/include/samtools/cut_target.c.pysam.c' adding 'pysam/include/samtools/dict.c' adding 'pysam/include/samtools/dict.c.pysam.c' adding 'pysam/include/samtools/faidx.c' adding 'pysam/include/samtools/faidx.c.pysam.c' adding 'pysam/include/samtools/padding.c' adding 'pysam/include/samtools/padding.c.pysam.c' adding 'pysam/include/samtools/phase.c' adding 'pysam/include/samtools/phase.c.pysam.c' adding 'pysam/include/samtools/reference.c' adding 'pysam/include/samtools/reference.c.pysam.c' adding 'pysam/include/samtools/reset.c' adding 'pysam/include/samtools/reset.c.pysam.c' adding 'pysam/include/samtools/sam_opts.c' adding 'pysam/include/samtools/sam_opts.c.pysam.c' adding 'pysam/include/samtools/sam_opts.h' adding 'pysam/include/samtools/sam_utils.c' adding 'pysam/include/samtools/sam_utils.c.pysam.c' adding 'pysam/include/samtools/sam_utils.h' adding 'pysam/include/samtools/sam_view.c' adding 'pysam/include/samtools/sam_view.c.pysam.c' adding 'pysam/include/samtools/sample.c' adding 'pysam/include/samtools/sample.c.pysam.c' adding 'pysam/include/samtools/sample.h' adding 'pysam/include/samtools/samtools.h' adding 'pysam/include/samtools/samtools.pysam.c' adding 'pysam/include/samtools/samtools.pysam.h' adding 'pysam/include/samtools/splaysort.h' adding 'pysam/include/samtools/stats.c' adding 'pysam/include/samtools/stats.c.pysam.c' adding 'pysam/include/samtools/stats_isize.c' adding 'pysam/include/samtools/stats_isize.c.pysam.c' adding 'pysam/include/samtools/stats_isize.h' adding 'pysam/include/samtools/tmp_file.c' adding 'pysam/include/samtools/tmp_file.c.pysam.c' adding 'pysam/include/samtools/tmp_file.h' adding 'pysam/include/samtools/version.sh' adding 'pysam/include/samtools/lz4/LICENSE' adding 'pysam/include/samtools/lz4/lz4.c' adding 'pysam/include/samtools/lz4/lz4.c.pysam.c' adding 'pysam/include/samtools/lz4/lz4.h' adding 'pysam-0.24.0.dist-info/licenses/AUTHORS' adding 'pysam-0.24.0.dist-info/licenses/COPYING' adding 'pysam-0.24.0.dist-info/METADATA' adding 'pysam-0.24.0.dist-info/WHEEL' adding 'pysam-0.24.0.dist-info/top_level.txt' adding 'pysam-0.24.0.dist-info/RECORD' removing build/bdist.linux-riscv64/wheel Building wheel for pysam (pyproject.toml): finished with status 'done' Created wheel for pysam: filename=pysam-0.24.0-cp315-cp315-linux_riscv64.whl size=18864026 sha256=458227f3658c037a857ffa5e84c53cf8ee5a242d6182033ef530c436321d338b Stored in directory: /builddir/.cache/pip/wheels/2a/fa/fc/83fb2d93fa97df63a0dc933ad58b36b77415391e4ed590bda9 Successfully built pysam ++ echo /builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/build/lib.linux-riscv64-cpython-315 + PYTHONPATH=/builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/build/lib.linux-riscv64-cpython-315 + sphinx-build-3 doc html Running Sphinx v9.1.0 loading translations [en]... done making output directory... done [autosummary] generating autosummary for: api.rst, benchmarking.rst, developer.rst, faq.rst, glossary.rst, index.rst, installation.rst, release.rst, usage.rst loading intersphinx inventory 'python' from https://docs.python.org/3.15/objects.inv ... WARNING: failed to reach any of the inventories with the following issues: intersphinx inventory 'https://docs.python.org/3.15/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3.15/objects.inv (Caused by NameResolutionError("HTTPSConnection(host='docs.python.org', port=443): Failed to resolve 'docs.python.org' ([Errno -3] Temporary failure in name resolution)")) building [mo]: targets for 0 po files that are out of date writing output... building [html]: targets for 9 source files that are out of date updating environment: [new config] 9 added, 0 changed, 0 removed reading sources... [ 11%] api reading sources... [ 22%] benchmarking reading sources... [ 33%] developer reading sources... [ 44%] faq reading sources... [ 56%] glossary reading sources... [ 67%] index reading sources... [ 78%] installation reading sources... [ 89%] release reading sources... [100%] usage looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done copying assets... copying static files... Writing evaluated template result to /builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/html/_static/basic.css Writing evaluated template result to /builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/html/_static/documentation_options.js Writing evaluated template result to /builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/html/_static/language_data.js Writing evaluated template result to /builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/html/_static/js/versions.js copying static files: done copying extra files... copying extra files: done copying assets: done writing output... [ 11%] api writing output... [ 22%] benchmarking writing output... [ 33%] developer writing output... [ 44%] faq writing output... [ 56%] glossary writing output... [ 67%] index writing output... [ 78%] installation writing output... [ 89%] release writing output... [100%] usage generating indices... genindex done writing additional pages... search done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 1 warning. The HTML pages are in html. + rm -rf html/.doctrees html/.buildinfo + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.UNn0HG + umask 022 + cd /builddir/build/BUILD/python-pysam-0.24.0-build + '[' /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT '!=' / ']' + rm -rf /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT ++ dirname /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT + mkdir -p /builddir/build/BUILD/python-pysam-0.24.0-build + mkdir /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer ' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Wp,-U_FORTIFY_SOURCE,-D_FORTIFY_SOURCE=3 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -march=rva23u64 -mabi=lp64d -fasynchronous-unwind-tables -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -I/usr/lib64/gfortran/modules ' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + RUSTFLAGS='-Copt-level=3 -Cdebuginfo=2 -Ccodegen-units=1 -Cstrip=none -Cforce-frame-pointers=yes -Clink-arg=-specs=/usr/lib/rpm/redhat/redhat-package-notes --cap-lints=warn' + export RUSTFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-hardened-ld-errors -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes ' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd pysam-0.24.0 ++ ls /builddir/build/BUILD/python-pysam-0.24.0-build/pyproject-wheeldir/pysam-0.24.0-cp315-cp315-linux_riscv64.whl ++ xargs basename --multiple ++ sed -E 's/([^-]+)-([^-]+)-.+\.whl/\1==\2/' + specifier=pysam==0.24.0 + '[' -z pysam==0.24.0 ']' + PIP_CONFIG_FILE=/dev/null + TMPDIR=/builddir/build/BUILD/python-pysam-0.24.0-build/.pyproject-builddir + /usr/bin/python3 -m pip install --root /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT --prefix /usr --no-deps --disable-pip-version-check --progress-bar off --verbose --ignore-installed --no-warn-script-location --no-index --no-cache-dir --find-links /builddir/build/BUILD/python-pysam-0.24.0-build/pyproject-wheeldir pysam==0.24.0 Using pip 26.1.2 from /usr/lib/python3.15/site-packages/pip (python 3.15) Looking in links: /builddir/build/BUILD/python-pysam-0.24.0-build/pyproject-wheeldir Processing /builddir/build/BUILD/python-pysam-0.24.0-build/pyproject-wheeldir/pysam-0.24.0-cp315-cp315-linux_riscv64.whl Installing collected packages: pysam Successfully installed pysam-0.24.0 + '[' -d /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/bin ']' + rm -f /builddir/build/BUILD/python-pysam-0.24.0-build/python-pysam-0.24.0-4.fc45.riscv64-pyproject-ghost-distinfo + site_dirs=() + '[' -d /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/lib/python3.15/site-packages ']' + '[' /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/lib64/python3.15/site-packages '!=' /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/lib/python3.15/site-packages ']' + '[' -d /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/lib64/python3.15/site-packages ']' + site_dirs+=("/usr/lib64/python3.15/site-packages") + for site_dir in ${site_dirs[@]} + for distinfo in /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT$site_dir/*.dist-info + echo '%ghost %dir /usr/lib64/python3.15/site-packages/pysam-0.24.0.dist-info' +++ basename /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/lib64/python3.15/site-packages/pysam-0.24.0.dist-info ++ PYTHONPATH=/usr/lib/rpm/redhat ++ /usr/bin/python3 -sBc 'import sys; from pyproject_save_files import canonical_name_from_distinfo; print(canonical_name_from_distinfo(sys.argv[1]))' pysam-0.24.0.dist-info + _normalized=pysam + echo '%ghost %dir /usr/lib64/python3.15/site-packages/pysam-0.24.0.dist-info' + sed -i s/pip/rpm/ /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/lib64/python3.15/site-packages/pysam-0.24.0.dist-info/INSTALLER + PYTHONPATH=/usr/lib/rpm/redhat + /usr/bin/python3 -B /usr/lib/rpm/redhat/pyproject_preprocess_record.py --buildroot /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT --record /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/lib64/python3.15/site-packages/pysam-0.24.0.dist-info/RECORD --output /builddir/build/BUILD/python-pysam-0.24.0-build/python-pysam-0.24.0-4.fc45.riscv64-pyproject-record + rm -fv /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/lib64/python3.15/site-packages/pysam-0.24.0.dist-info/RECORD removed '/builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/lib64/python3.15/site-packages/pysam-0.24.0.dist-info/RECORD' + rm -fv /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/lib64/python3.15/site-packages/pysam-0.24.0.dist-info/REQUESTED removed '/builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/lib64/python3.15/site-packages/pysam-0.24.0.dist-info/REQUESTED' + '[' -f /builddir/build/BUILD/python-pysam-0.24.0-build/python-pysam-0.24.0-4.fc45.riscv64-pyproject-dep-overrides ']' ++ wc -l /builddir/build/BUILD/python-pysam-0.24.0-build/python-pysam-0.24.0-4.fc45.riscv64-pyproject-ghost-distinfo ++ cut -f1 '-d ' + lines=1 + '[' 1 -ne 1 ']' + rm /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/lib64/python3.15/site-packages/pysam/libcalignedsegment.pyx /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/lib64/python3.15/site-packages/pysam/libcalignmentfile.pyx /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/lib64/python3.15/site-packages/pysam/libcbcf.pyx /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/lib64/python3.15/site-packages/pysam/libcbcftools.pyx /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/lib64/python3.15/site-packages/pysam/libcbgzf.pyx /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/lib64/python3.15/site-packages/pysam/libcfaidx.pyx /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/lib64/python3.15/site-packages/pysam/libchtslib.pyx /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/lib64/python3.15/site-packages/pysam/libcsamfile.pyx /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/lib64/python3.15/site-packages/pysam/libcsamtools.pyx /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/lib64/python3.15/site-packages/pysam/libctabix.pyx /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/lib64/python3.15/site-packages/pysam/libctabixproxies.pyx /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/lib64/python3.15/site-packages/pysam/libcutils.pyx /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/lib64/python3.15/site-packages/pysam/libcvcf.pyx + rm /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/lib64/python3.15/site-packages/pysam/conftest_cstd.c /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/lib64/python3.15/site-packages/pysam/htslib_util.c + /usr/bin/find-debuginfo -j8 --strict-build-id -m -i --build-id-seed 0.24.0-4.fc45 --unique-debug-suffix -0.24.0-4.fc45.riscv64 --unique-debug-src-base python-pysam-0.24.0-4.fc45.riscv64 --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 --remove-section .gnu.build.attributes -S debugsourcefiles.list /builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0 find-debuginfo: starting Extracting debug info from 13 files DWARF-compressing 13 files sepdebugcrcfix: Updated 13 CRC32s, 0 CRC32s did match. Creating .debug symlinks for symlinks to ELF files Copying sources found by 'debugedit -l' to /usr/src/debug/python-pysam-0.24.0-4.fc45.riscv64 find-debuginfo: done + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + COMPRESS='gzip -9 -n' + COMPRESS_EXT=.gz + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs mangling shebang in /usr/lib64/python3.15/site-packages/pysam/include/bcftools/version.sh from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib64/python3.15/site-packages/pysam/include/htslib/config.guess from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib64/python3.15/site-packages/pysam/include/htslib/config.sub from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib64/python3.15/site-packages/pysam/include/htslib/configure from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib64/python3.15/site-packages/pysam/include/htslib/version.sh from /bin/sh to #!/usr/bin/sh mangling shebang in /usr/lib64/python3.15/site-packages/pysam/include/samtools/version.sh from /bin/sh to #!/usr/bin/sh + /usr/lib/rpm/brp-remove-la-files + /usr/lib/rpm/redhat/brp-python-rpm-in-distinfo + env /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 -j8 Bytecompiling .py files below /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/lib64/python3.15 using python3.15 Bytecompiling .py files below /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/lib/debug/usr/lib64/python3.15 using python3.15 + /usr/lib/rpm/redhat/brp-python-hardlink + /usr/bin/add-det --brp -j8 /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/lib64/python3.15/site-packages/pysam/include/__pycache__/__init__.cpython-315.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/lib64/python3.15/site-packages/pysam/__pycache__/config.cpython-315.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/lib64/python3.15/site-packages/pysam/__pycache__/__init__.cpython-315.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/lib64/python3.15/site-packages/pysam/__pycache__/samtools.cpython-315.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/lib64/python3.15/site-packages/pysam/__pycache__/bcftools.cpython-315.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/lib64/python3.15/site-packages/pysam/__pycache__/version.cpython-315.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/lib64/python3.15/site-packages/pysam/__pycache__/Pileup.cpython-315.pyc: replacing with normalized version /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/lib64/python3.15/site-packages/pysam/__pycache__/utils.cpython-315.pyc: rewriting with normalized contents /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/lib64/python3.15/site-packages/pysam/__pycache__/Pileup.cpython-315.opt-1.pyc: replacing with normalized version Scanned 41 directories and 798 files, processed 9 inodes, 9 modified (2 replaced + 7 rewritten), 0 unsupported format, 0 errors + /usr/bin/linkdupes --brp /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr Scanned 40 directories and 798 files, considered 798 files, read 18 files, linked 3 files, 0 errors sum of sizes of linked files: 77 bytes Reading /builddir/build/BUILD/python-pysam-0.24.0-build/SPECPARTS/rpm-debuginfo.specpart Processing files: python3-pysam-0.24.0-4.fc45.riscv64 Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.VL1Okj + umask 022 + cd /builddir/build/BUILD/python-pysam-0.24.0-build + cd pysam-0.24.0 + DOCDIR=/builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/share/doc/python3-pysam + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/share/doc/python3-pysam + cp -pr /builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/README.rst /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/share/doc/python3-pysam + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.JKEIxB + umask 022 + cd /builddir/build/BUILD/python-pysam-0.24.0-build + cd pysam-0.24.0 + LICENSEDIR=/builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/share/licenses/python3-pysam + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/share/licenses/python3-pysam + cp -pr /builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/COPYING /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/share/licenses/python3-pysam + cp -pr /builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/bcftools/LICENSE /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/share/licenses/python3-pysam + cp -pr /builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/htslib/LICENSE /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/share/licenses/python3-pysam + cp -pr /builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/samtools/LICENSE /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/share/licenses/python3-pysam + RPM_EC=0 ++ jobs -p + exit 0 warning: File listed twice: /usr/share/licenses/python3-pysam/LICENSE warning: File listed twice: /usr/share/licenses/python3-pysam/LICENSE Provides: bundled(bcftools) = 1.23.1 bundled(htslib) = 1.23.1 bundled(samtools) = 1.23.1 libcalignedsegment.cpython-315-riscv64-linux-gnu.so()(64bit) libcalignmentfile.cpython-315-riscv64-linux-gnu.so()(64bit) libcbcf.cpython-315-riscv64-linux-gnu.so()(64bit) libcbcftools.cpython-315-riscv64-linux-gnu.so()(64bit) libcbgzf.cpython-315-riscv64-linux-gnu.so()(64bit) libcfaidx.cpython-315-riscv64-linux-gnu.so()(64bit) libchtslib.cpython-315-riscv64-linux-gnu.so()(64bit) libcsamfile.cpython-315-riscv64-linux-gnu.so()(64bit) libcsamtools.cpython-315-riscv64-linux-gnu.so()(64bit) libctabix.cpython-315-riscv64-linux-gnu.so()(64bit) libctabixproxies.cpython-315-riscv64-linux-gnu.so()(64bit) libcutils.cpython-315-riscv64-linux-gnu.so()(64bit) libcvcf.cpython-315-riscv64-linux-gnu.so()(64bit) python-pysam = 0.24.0-4.fc45 python3-pysam = 0.24.0-4.fc45 python3-pysam(riscv-64) = 0.24.0-4.fc45 python3.15-pysam = 0.24.0-4.fc45 python3.15dist(pysam) = 0.24 python3dist(pysam) = 0.24 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld-linux-riscv64-lp64d.so.1()(64bit) ld-linux-riscv64-lp64d.so.1(GLIBC_2.27)(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.27)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.38)(64bit) libcbcftools.cpython-315-riscv64-linux-gnu.so()(64bit) libchtslib.cpython-315-riscv64-linux-gnu.so()(64bit) libcsamtools.cpython-315-riscv64-linux-gnu.so()(64bit) liblzma.so.5()(64bit) liblzma.so.5(XZ_5.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.27)(64bit) libz.so.1()(64bit) python(abi) = 3.15 rtld(GNU_HASH) Processing files: python3-pysam-devel-0.24.0-4.fc45.riscv64 Provides: python-pysam-devel = 0.24.0-4.fc45 python3-pysam-devel = 0.24.0-4.fc45 python3-pysam-devel(riscv-64) = 0.24.0-4.fc45 python3.15-pysam-devel = 0.24.0-4.fc45 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PartialHardlinkSets) <= 4.0.4-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: /usr/bin/sh python(abi) = 3.15 Processing files: python-pysam-doc-0.24.0-4.fc45.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.v0z26I + umask 022 + cd /builddir/build/BUILD/python-pysam-0.24.0-build + cd pysam-0.24.0 + DOCDIR=/builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/share/doc/python-pysam-doc + export LC_ALL=C.UTF-8 + LC_ALL=C.UTF-8 + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/share/doc/python-pysam-doc + cp -pr /builddir/build/BUILD/python-pysam-0.24.0-build/pysam-0.24.0/html /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT/usr/share/doc/python-pysam-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: python-pysam-doc = 0.24.0-4.fc45 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: python-pysam-debugsource-0.24.0-4.fc45.riscv64 Provides: python-pysam-debugsource = 0.24.0-4.fc45 python-pysam-debugsource(riscv-64) = 0.24.0-4.fc45 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: python3-pysam-debuginfo-0.24.0-4.fc45.riscv64 Provides: debuginfo(build-id) = 04057403c64cb25c0d4e10ed9edcf70de8a4716d debuginfo(build-id) = 1545f10f349ef9330633608a39032640d6387965 debuginfo(build-id) = 4809149a8f0e70cf6088dc5392b9612903cb2c85 debuginfo(build-id) = 55e4c3551935ad809efeb452b71335658bf8dfee debuginfo(build-id) = 5d1b58055d0c236d12371ddfb31d029dc83d6387 debuginfo(build-id) = 718759fa8f42c1aedeb3f9e7110871678672e248 debuginfo(build-id) = 918c283d6485aab42b2c312897417f53b80c2ff8 debuginfo(build-id) = 975c52e6b2203b5f187964a7ec0d92365bf968a8 debuginfo(build-id) = b55d731671f1ed8b67a297fe67a3815a690efbfd debuginfo(build-id) = bde1feae2b75d05b5f1eee994152284332f04e07 debuginfo(build-id) = eff21f864c7c6e9a66691d935350d20cbb4fe581 debuginfo(build-id) = f2149d77e3e3a031337993ecf199bb1e31997b8b debuginfo(build-id) = f37b232de6f3367f79e9111f91afe29ecd5ed9d6 libcalignedsegment.cpython-315-riscv64-linux-gnu.so-0.24.0-4.fc45.riscv64.debug()(64bit) libcalignmentfile.cpython-315-riscv64-linux-gnu.so-0.24.0-4.fc45.riscv64.debug()(64bit) libcbcf.cpython-315-riscv64-linux-gnu.so-0.24.0-4.fc45.riscv64.debug()(64bit) libcbcftools.cpython-315-riscv64-linux-gnu.so-0.24.0-4.fc45.riscv64.debug()(64bit) libcbgzf.cpython-315-riscv64-linux-gnu.so-0.24.0-4.fc45.riscv64.debug()(64bit) libcfaidx.cpython-315-riscv64-linux-gnu.so-0.24.0-4.fc45.riscv64.debug()(64bit) libchtslib.cpython-315-riscv64-linux-gnu.so-0.24.0-4.fc45.riscv64.debug()(64bit) libcsamfile.cpython-315-riscv64-linux-gnu.so-0.24.0-4.fc45.riscv64.debug()(64bit) libcsamtools.cpython-315-riscv64-linux-gnu.so-0.24.0-4.fc45.riscv64.debug()(64bit) libctabix.cpython-315-riscv64-linux-gnu.so-0.24.0-4.fc45.riscv64.debug()(64bit) libctabixproxies.cpython-315-riscv64-linux-gnu.so-0.24.0-4.fc45.riscv64.debug()(64bit) libcutils.cpython-315-riscv64-linux-gnu.so-0.24.0-4.fc45.riscv64.debug()(64bit) libcvcf.cpython-315-riscv64-linux-gnu.so-0.24.0-4.fc45.riscv64.debug()(64bit) python-pysam-debuginfo = 0.24.0-4.fc45 python3-pysam-debuginfo = 0.24.0-4.fc45 python3-pysam-debuginfo(riscv-64) = 0.24.0-4.fc45 python3.15-pysam-debuginfo = 0.24.0-4.fc45 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: python-pysam-debugsource(riscv-64) = 0.24.0-4.fc45 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILD/python-pysam-0.24.0-build/BUILDROOT Wrote: /builddir/build/SRPMS/python-pysam-0.24.0-4.fc45.src.rpm Wrote: /builddir/build/RPMS/python-pysam-doc-0.24.0-4.fc45.noarch.rpm Wrote: /builddir/build/RPMS/python3-pysam-0.24.0-4.fc45.riscv64.rpm Wrote: /builddir/build/RPMS/python3-pysam-devel-0.24.0-4.fc45.riscv64.rpm Wrote: /builddir/build/RPMS/python-pysam-debugsource-0.24.0-4.fc45.riscv64.rpm Wrote: /builddir/build/RPMS/python3-pysam-debuginfo-0.24.0-4.fc45.riscv64.rpm RPM build warnings: File listed twice: /usr/share/licenses/python3-pysam/LICENSE File listed twice: /usr/share/licenses/python3-pysam/LICENSE Child return code was: 0